News

Visual Analytics for Bio-Workflows at BIOINFORMATICS-2013

"Visualization of bioinformatics workflows for ease of understanding and design activities" paper will be presented at the BIOSTEC-BIOINFORMATICS-2013 conference, on February 11th, 2013, Bercelona, Spain. [http://www.molgenis.org/raw-attachment/blog ...

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• Posted: 2013-01-31 10:57 (Updated: 2013-01-31 10:59)
• Author: george
• Categories: MCF
• Comments (0)

MOLGENIS/compute workshop at BioAssist meeting

MOLGENIS/compute workshop took place at the NBIC Bio Assist meeting, in Utrect, Oct.12, 2012

• Posted: 2012-11-22 13:41 (Updated: 2012-11-22 13:42)
• Author: george
• Categories: MCF
• Comments (0)

MOLGENIS/compute at IWSG-Life 2012

MOLGENIS/compute demo was given at the 4th International Workshop on Science Gateways for Life Sciences, May 23-25 2012, Amsterdam, Netherlands

• Posted: 2012-11-22 13:33
• Author: george
• Categories: MCF
• Comments (0)

MOLGENIS/compute at NBIC-2012

MOLGENIS/compute demo was given at the NBIC-2012 conference in Lunteren, Netherlands, Apr.23, 2012

• Posted: 2012-11-22 13:28
• Author: george
• Categories: MCF
• Comments (0)

MOLGENIS/compute at BIOINFORMATICS-2012

MOLGENIS/compute was accepted as a full paper and presented at the International Conference on Bioinformatics Models, Methods and Algorithms, Algarve, Portugal, Feb.3 2012. (BIOINFORMATICS 2012 received 109 submissions, of which 14% were accepted as ...

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• Posted: 2012-11-22 13:17 (Updated: 2013-01-31 10:50)
• Author: george
• Categories: MCF
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Welcome to MOLGENIS

MOLGENIS is two things:

1. For biologists MOLGENIS is a suite of web databases for genotype, phenotype, QTL and analysis pipelines.
2. For bioinformaticians MOLGENIS is software generator to rapidly build web databases that make your biologists happy.

Each MOLGENIS has nice web user interfaces as well as scriptable interfaces to plug-in R, Java and web services.

MOLGENIS applications:

• xQTL Workbench for multi-level QTL mapping (project,  publication)
• Dystrophic Epidermolysis Bullosa (deb-central) mutation database ( project,  publication)
• eXtensible Genotype and Phenotype database (XGAP) (project,  publication)
• Design of Genetical Genomics Experiments (designGG)] ( project,  publication)
• BBMRI-NL biobank catalogue ( project)
• MAGE-TAB microarray gene experiment object model (MAGETAB-OM)] ( project,  demo)
• Pheno-OM Phenotype observation model (project,  demo)
• Mouse Resource Browser (MRB) project] ( project,  publication)
• MOLGENIS as data wrapper in Taverna ( publication)
• Animal observation database (AnimalDB) ( project)
• Nordic GWAS control database ( project,  publication)
• GWAS Central curation tool ( project)
• Finnish disease database (FINDIS) ( project)
• Bacterial microarrays database (MOLGEN-IS) ( publication)
• Human Metabolic Pathway Database ( project,  publication)

If you think your project should be listed (differently) please let us know

Developing your own

Generate generate your own in three steps:

1. Model what you want for your experiment in a simple XML file example db, example ui
2. Run the MOLGENIS generator
3. Use your web application  example.

See

• MOLGENIS tutorial
• MolgenisGuide -- How to generate your own MOLGENIS
• MolgenisApps -- Our app suite [in development]
• MolgenisFaq -- Frequently asked questions about MOLGENIS and its use
• MolgenisGoogleGroup -- Join our Googlegroup mail forum for all things around MOLGENIS

Partners

The MOLGENIS project is supported by the University Medical Center Groningen  UMCG, Groningen Bioinformatics Center  GBIC, European Bioinformatics Institute  EBI and the Netherlands Bioinformatics Center  NBIC.