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Changeset 2564 for molgenis_distro
- Timestamp:
- 01/22/10 08:16:08 (2 years ago)
- Location:
- molgenis_distro/3.3
- Files:
-
- 3 edited
-
molgenis.properties (modified) (1 diff)
-
molgenis_db.xml (modified) (4 diffs)
-
molgenis_ui.xml (modified) (1 diff)
Legend:
- Unmodified
- Added
- Removed
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molgenis_distro/3.3/molgenis.properties
r2420 r2564 13 13 # xml file with user screen descriptions in terms of 'form', 'menu',.. 14 14 model_userinterface = molgenis_ui.xml 15 16 example_data_dir = data 15 17 16 18 ############################################################### -
molgenis_distro/3.3/molgenis_db.xml
r2449 r2564 1 <?xml version="1.0" encoding="UTF-8"?> 2 <!--DOCTYPE molgenis PUBLIC "MOLGENIS 1.0" "http://molgenis.sourceforge.net/dtd/molgenis_v_1_0.dtd"--> 1 <?xml version="1.0" encoding="UTF-8"?> 2 <!-- 3 DOCTYPE molgenis PUBLIC "MOLGENIS 1.0" 4 "http://molgenis.sourceforge.net/dtd/molgenis_v_1_0.dtd" 5 --> 3 6 <molgenis name="example" label="My MOLGENIS"> 4 <description>This is an minimal example database to show how 5 MOLGENIS works. The purpose of this example database is to 6 administrate experiment, samples, traits and measurements. The 7 name='example' will result in a Java package 'example' being 8 generated.</description> 7 <description>This is an minimal example database to show how MOLGENIS works. 8 The purpose of this example database is to administrate experiment, samples, 9 traits and measurements. The name='example' will result in a Java package 10 'example' being generated.</description> 9 11 <!-- abstract data types --> 10 12 <entity name="Identifiable" abstract="true"> 11 <description>For modeling purposes only (denoted by 12 abstract='true', this entity defines fields id and name centrally. 13 </description> 13 <description>For modeling purposes only (denoted by abstract='true', this 14 entity defines fields id and name centrally.</description> 14 15 <field name="Id" type="autoid" description="autogenerated id number (autoid)" /> 15 16 <field name="Name" unique="true" readonly="true" … … 26 27 <!-- sample description structure --> 27 28 <entity name="Sample" implements="Identifiable"> 28 <description>Samples that are part of an experiment. 29 </description> 30 <field name="Species" default="Arabidopsis thaliana" 31 description="Species, default to Arabidopsis" /> 29 <description>Samples that are part of an experiment.</description> 30 <field name="Experiment" type="xref" xref_field="Experiment.Id" 31 xref_label="Name" 32 description="Samples are part-of one experiment (by cross reference to Experiment.id)" /> 33 <field name="Species" default="Arabidopsis thaliana" description="Species, default to Arabidopsis" /> 32 34 <field name="Tissue" nillable="true" description="Optional specification of tissue" /> 33 35 <field name="Sex" type="enum" enum_options="[male,female,unknown]" 34 36 description="Fixed choice on Sex" /> 35 <field name="Experiment" type="xref" xref_field="Experiment.Id" xref_label="Name" 36 description="Samples are part-of one experiment (by cross reference to Experiment.id)" /> 37 <field name="SampleTime" type="datetime"/> 37 <field name="SampleTime" type="datetime" /> 38 38 </entity> 39 39 <entity name="SpecialSample" extends="Sample"> … … 42 42 <!-- trait description structure --> 43 43 <entity name="Trait" implements="Identifiable"> 44 <description>Traits that are studied in this experiment. 45 </description> 46 <field name="Molcular" type="bool" 44 <description>Traits that are studied in this experiment.</description> 45 <field name="Molecular" type="bool" 47 46 description="Indication whether this is a molecular trait" /> 48 47 <field name="Experiment" type="xref" xref_field="Experiment.Id" … … 51 50 </entity> 52 51 <!-- trait description structure --> 53 <entity name="Measurement" implements="Identifiable"> 54 <description>Measurements (i.e. set of trait observations 55 per sample) that are part of an experiment.</description> 52 <entity name="Data"> 53 <description>Data values (observations) of a measurement. Note: Data doesn't 54 inherit from Identifiable because it has no unique name.</description> 55 <field name="Id" type="autoid" description="autogenerated id number" /> 56 56 <field name="Experiment" type="xref" xref_field="Experiment.Id" 57 57 xref_label="Name" description="Measurements are part-of one experiment" /> 58 <field name="DataFile" type="file" 59 description="A file attachment that summarizes the results" /> 60 </entity> 61 <entity name="Data"> 62 <description>Data values (observations) of a measurement. Note: 63 Data doesn't inherit from Identifiable because it has no unique name. 64 </description> 65 <field name="Id" type="autoid" description="autogenerated id number" /> 66 <field name="Measurement" type="xref" xref_field="Measurement.id" 67 xref_label="Name" description="Data values are part-of one Measurement" /> 68 <field name="Sample" type="xref" xref_field="Sample.Id" 69 xref_label="Name" description="The sample this measurement is on" /> 70 <field name="Trait" type="xref" xref_field="Trait.Id" 71 xref_label="Name" description="The trait this measurement is on" /> 58 <field name="Sample" type="xref" xref_field="Sample.Id" xref_label="Name" 59 description="The sample this measurement is on" /> 60 <field name="Trait" type="xref" xref_field="Trait.Id" xref_label="Name" 61 description="The trait this measurement is on" /> 72 62 <field name="Value" description="The value measured/calculated" /> 73 <unique fields=" Measurement,Sample,Trait" description="There can be only one value per Sample X Trait" />63 <unique fields="Experiment,Sample,Trait" description="There can be only one value per Sample X Trait" /> 74 64 </entity> 75 65 </molgenis> -
molgenis_distro/3.3/molgenis_ui.xml
r2558 r2564 11 11 <form name="Samples" entity="Sample" view="list" /> 12 12 <form name="Traits" entity="Trait" view="list" /> 13 <form name="Measurements" entity="Measurement"> 14 <form name="Data" entity="Data" /> 15 </form> 13 <form name="Data" entity="Data" /> 16 14 </menu> 17 15 </form>
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