Changeset 2620

Timestamp:

02/02/10 17:46:49 (2 years ago)

Author:

jlops

Message:

initial import

Location:

molgenis_projects/gims

Files:

• . (modified) (1 prop)
• README.txt (added)
• WebContent (added)
• WebContent/META-INF (added)
• WebContent/META-INF/MANIFEST.MF (added)
• WebContent/META-INF/context.xml (added)
• WebContent/WEB-INF (added)
• WebContent/WEB-INF/lib (added)
• WebContent/WEB-INF/lib/WHICH_JARS (added)
• WebContent/WEB-INF/lib/XmlSchema-1.4.2.jar (added)
• WebContent/WEB-INF/lib/ant-apache-log4j.jar (added)
• WebContent/WEB-INF/lib/ant.jar (added)
• WebContent/WEB-INF/lib/asm-2.2.3.jar (added)
• WebContent/WEB-INF/lib/cmdline_1.2.0.jar (added)
• WebContent/WEB-INF/lib/commons-collections.jar (added)
• WebContent/WEB-INF/lib/commons-dbcp-1.2.1.jar (added)
• WebContent/WEB-INF/lib/commons-fileupload-1.1.jar (added)
• WebContent/WEB-INF/lib/commons-io-1.3.1.jar (added)
• WebContent/WEB-INF/lib/commons-lang-2.3.jar (added)
• WebContent/WEB-INF/lib/commons-logging-1.1.1.jar (added)
• WebContent/WEB-INF/lib/commons-pool-1.2.jar (added)
• WebContent/WEB-INF/lib/cxf-2.1.2.jar (added)
• WebContent/WEB-INF/lib/domsax_1.1.0.jar (added)
• WebContent/WEB-INF/lib/freemarker.jar (added)
• WebContent/WEB-INF/lib/javax.servlet.jar (added)
• WebContent/WEB-INF/lib/jaxb-impl-2.1.7.jar (added)
• WebContent/WEB-INF/lib/jaxb-xjc-2.1.7.jar (added)
• WebContent/WEB-INF/lib/jaxen-1.1.jar (added)
• WebContent/WEB-INF/lib/jdom-1.0.jar (added)
• WebContent/WEB-INF/lib/junit-4.4.jar (added)
• WebContent/WEB-INF/lib/log4j-1.2.9.jar (added)
• WebContent/WEB-INF/lib/mysql-connector-java-5.1.2-beta-bin.jar (added)
• WebContent/WEB-INF/lib/neethi-2.0.4.jar (added)
• WebContent/WEB-INF/lib/postgresql-8.3-603.jdbc4.jar (added)
• WebContent/WEB-INF/lib/stax-utils-20060502.jar (added)
• WebContent/WEB-INF/lib/trove.jar (added)
• WebContent/WEB-INF/lib/wsdl4j-1.6.2.jar (added)
• WebContent/WEB-INF/lib/xercesImpl.jar (added)
• WebContent/WEB-INF/lib/xml-resolver-1.2.jar (added)
• WebContent/WEB-INF/web.xml (added)
• WebContent/about.html (added)
• WebContent/doc (added)
• WebContent/doc/entity-uml-diagram.dot (added)
• WebContent/doc/entity-uml-diagram.dot.png (added)
• WebContent/doc/objectmodel.html (added)
• WebContent/doc/tabledoc.html (added)
• WebContent/index.html (added)
• WebContent/res (added)
• WebContent/res/css (added)
• WebContent/res/css/colors.css (added)
• WebContent/res/css/colors_blue.css (added)
• WebContent/res/css/colors_grey.css (added)
• WebContent/res/css/colors_maroon.css (added)
• WebContent/res/css/data.css (added)
• WebContent/res/css/dateinput.css (added)
• WebContent/res/css/dateipnut.css (added)
• WebContent/res/css/main.css (added)
• WebContent/res/css/menu.css (added)
• WebContent/res/css/xrefinput.css (added)
• WebContent/res/img (added)
• WebContent/res/img/cancel.png (added)
• WebContent/res/img/close.png (added)
• WebContent/res/img/delete.png (added)
• WebContent/res/img/deselect.png (added)
• WebContent/res/img/deselectall.png (added)
• WebContent/res/img/download.png (added)
• WebContent/res/img/editview.gif (added)
• WebContent/res/img/exit.bmp (added)
• WebContent/res/img/filter.png (added)
• WebContent/res/img/first.png (added)
• WebContent/res/img/last.png (added)
• WebContent/res/img/limit.png (added)
• WebContent/res/img/listview.png (added)
• WebContent/res/img/logo_molgenis.gif (added)
• WebContent/res/img/new.png (added)
• WebContent/res/img/next.png (added)
• WebContent/res/img/none.png (added)
• WebContent/res/img/open.png (added)
• WebContent/res/img/prev.png (added)
• WebContent/res/img/pulldown.gif (added)
• WebContent/res/img/recordview.png (added)
• WebContent/res/img/reset.png (added)
• WebContent/res/img/save.png (added)
• WebContent/res/img/select.png (added)
• WebContent/res/img/sort_asc.gif (added)
• WebContent/res/img/sort_desc.gif (added)
• WebContent/res/img/update.gif (added)
• WebContent/res/img/upload.png (added)
• WebContent/res/img/web.xml (added)
• WebContent/res/scripts (added)
• WebContent/res/scripts/all.js (added)
• WebContent/res/scripts/dateinput.js (added)
• WebContent/res/scripts/datetimeinput.js (added)
• WebContent/res/scripts/menu.js (added)
• WebContent/res/scripts/mrefinput.js (added)
• WebContent/res/scripts/popup.js (added)
• WebContent/res/scripts/xrefinput.js (added)
• build (added)
• build.xml (added)
• build/classes (added)
• build/classes/MolgenisExtractModel.class (added)
• build/classes/MolgenisGenerate.class (added)
• build/classes/MolgenisServlet.class (added)
• build/classes/MolgenisUpdateDatabase.class (added)
• build/classes/README.txt (added)
• build/classes/TestMultirowPsql.class (added)
• build/classes/count_per_entity.sql (added)
• build/classes/count_per_table.sql (added)
• build/classes/create_tables.sql (added)
• build/classes/example (added)
• build/classes/example/R (added)
• build/classes/example/R/Data.R (added)
• build/classes/example/R/Entity.R (added)
• build/classes/example/R/Experiment.R (added)
• build/classes/example/R/Measurement.R (added)
• build/classes/example/R/Mref_User_Roles.R (added)
• build/classes/example/R/Role.R (added)
• build/classes/example/R/Role.R.svntmp (added)
• build/classes/example/R/RoleEntityPermission.R (added)
• build/classes/example/R/Sample.R (added)
• build/classes/example/R/Trait.R (added)
• build/classes/example/R/User.R (added)
• build/classes/example/SoapApi.class (added)
• build/classes/example/data (added)
• build/classes/example/data/CsvReaderFactory.class (added)
• build/classes/example/data/InMemoryDatabase.class (added)
• build/classes/example/data/JDBCDatabase.class (added)
• build/classes/example/data/csv (added)
• build/classes/example/data/csv/DataCsvReader$1.class (added)
• build/classes/example/data/csv/DataCsvReader.class (added)
• build/classes/example/data/csv/EntityCsvReader$1.class (added)
• build/classes/example/data/csv/EntityCsvReader.class (added)
• build/classes/example/data/csv/ExperimentCsvReader$1.class (added)
• build/classes/example/data/csv/ExperimentCsvReader.class (added)
• build/classes/example/data/csv/MeasurementCsvReader$1.class (added)
• build/classes/example/data/csv/MeasurementCsvReader.class (added)
• build/classes/example/data/csv/Mref_User_RolesCsvReader$1.class (added)
• build/classes/example/data/csv/Mref_User_RolesCsvReader.class (added)
• build/classes/example/data/csv/RoleCsvReader$1.class (added)
• build/classes/example/data/csv/RoleCsvReader.class (added)
• build/classes/example/data/csv/RoleEntityPermissionCsvReader$1.class (added)
• build/classes/example/data/csv/RoleEntityPermissionCsvReader.class (added)
• build/classes/example/data/csv/SampleCsvReader$1.class (added)
• build/classes/example/data/csv/SampleCsvReader.class (added)
• build/classes/example/data/csv/TraitCsvReader$1.class (added)
• build/classes/example/data/csv/TraitCsvReader.class (added)
• build/classes/example/data/csv/UserCsvReader$1.class (added)
• build/classes/example/data/csv/UserCsvReader.class (added)
• build/classes/example/data/list (added)
• build/classes/example/data/list/DataList.class (added)
• build/classes/example/data/list/EntityList.class (added)
• build/classes/example/data/list/ExperimentList.class (added)
• build/classes/example/data/list/MeasurementList.class (added)
• build/classes/example/data/list/Mref_User_RolesList.class (added)
• build/classes/example/data/list/RoleEntityPermissionList.class (added)
• build/classes/example/data/list/RoleList.class (added)
• build/classes/example/data/list/SampleList.class (added)
• build/classes/example/data/list/TraitList.class (added)
• build/classes/example/data/list/UserList.class (added)
• build/classes/example/data/mappers (added)
• build/classes/example/data/mappers/DataMapper.class (added)
• build/classes/example/data/mappers/EntityMapper.class (added)
• build/classes/example/data/mappers/ExperimentMapper.class (added)
• build/classes/example/data/mappers/MeasurementMapper.class (added)
• build/classes/example/data/mappers/Mref_User_RolesMapper.class (added)
• build/classes/example/data/mappers/RoleEntityPermissionMapper.class (added)
• build/classes/example/data/mappers/RoleMapper.class (added)
• build/classes/example/data/mappers/SampleMapper.class (added)
• build/classes/example/data/mappers/TraitMapper.class (added)
• build/classes/example/data/mappers/UserMapper.class (added)
• build/classes/example/data/types (added)
• build/classes/example/data/types/Data.class (added)
• build/classes/example/data/types/Entity.class (added)
• build/classes/example/data/types/Experiment.class (added)
• build/classes/example/data/types/Identifiable.class (added)
• build/classes/example/data/types/Measurement.class (added)
• build/classes/example/data/types/Mref_User_Roles.class (added)
• build/classes/example/data/types/Role.class (added)
• build/classes/example/data/types/RoleEntityPermission.class (added)
• build/classes/example/data/types/Sample.class (added)
• build/classes/example/data/types/Trait.class (added)
• build/classes/example/data/types/User.class (added)
• build/classes/example/html (added)
• build/classes/example/html/DataHtmlForm.class (added)
• build/classes/example/html/EntityHtmlForm.class (added)
• build/classes/example/html/ExperimentHtmlForm.class (added)
• build/classes/example/html/IdentifiableHtmlForm.class (added)
• build/classes/example/html/MeasurementHtmlForm.class (added)
• build/classes/example/html/Mref_User_RolesHtmlForm.class (added)
• build/classes/example/html/RoleEntityPermissionHtmlForm.class (added)
• build/classes/example/html/RoleHtmlForm.class (added)
• build/classes/example/html/SampleHtmlForm.class (added)
• build/classes/example/html/TraitHtmlForm.class (added)
• build/classes/example/html/UserHtmlForm.class (added)
• build/classes/example/screen (added)
• build/classes/example/screen/MainMenu.class (added)
• build/classes/example/screen/main (added)
• build/classes/example/screen/main/Experiment (added)
• build/classes/example/screen/main/Experiment/ExperimentMenu (added)
• build/classes/example/screen/main/Experiment/ExperimentMenu/Measurements (added)
• build/classes/example/screen/main/Experiment/ExperimentMenu/Measurements/DataForm.class (added)
• build/classes/example/screen/main/Experiment/ExperimentMenu/MeasurementsForm.class (added)
• build/classes/example/screen/main/Experiment/ExperimentMenu/SamplesForm.class (added)
• build/classes/example/screen/main/Experiment/ExperimentMenu/TraitsForm.class (added)
• build/classes/example/screen/main/Experiment/ExperimentMenuMenu.class (added)
• build/classes/example/screen/main/ExperimentForm.class (added)
• build/classes/example/screen/main/PluginexamplesMenu.class (added)
• build/classes/example/screen/main/pluginexamples (added)
• build/classes/example/screen/main/pluginexamples/ExperimentQueryPlugin.class (added)
• build/classes/example/screen/main/pluginexamples/GooglePlugin.class (added)
• build/classes/example/screen/main/pluginexamples/HelloWorldPlugin.class (added)
• build/classes/example/source.R (added)
• build/classes/example/tools (added)
• build/classes/example/tools/CopyMemoryToDatabase.class (added)
• build/classes/example/tools/CsvExport.class (added)
• build/classes/example/tools/CsvImport.class (added)
• build/classes/example/tools/CsvImportByName$1.class (added)
• build/classes/example/tools/CsvImportByName$10.class (added)
• build/classes/example/tools/CsvImportByName$2.class (added)
• build/classes/example/tools/CsvImportByName$3.class (added)
• build/classes/example/tools/CsvImportByName$4.class (added)
• build/classes/example/tools/CsvImportByName$5.class (added)
• build/classes/example/tools/CsvImportByName$6.class (added)
• build/classes/example/tools/CsvImportByName$7.class (added)
• build/classes/example/tools/CsvImportByName$8.class (added)
• build/classes/example/tools/CsvImportByName$9.class (added)
• build/classes/example/tools/CsvImportByName$ImportResult.class (added)
• build/classes/example/tools/CsvImportByName$IntegerWrapper.class (added)
• build/classes/example/tools/CsvImportByName.class (added)
• build/classes/plugin (added)
• build/classes/plugin/examples (added)
• build/classes/plugin/examples/dbquery (added)
• build/classes/plugin/examples/dbquery/ExperimentQueryModel.class (added)
• build/classes/plugin/examples/dbquery/ExperimentQueryPlugin.class (added)
• build/classes/plugin/examples/dbquery/ExperimentQueryPlugin.ftl (added)
• build/classes/plugin/examples/helloworld (added)
• build/classes/plugin/examples/helloworld/HelloWorldModel.class (added)
• build/classes/plugin/examples/helloworld/HelloWorldPlugin.class (added)
• build/classes/plugin/examples/helloworld/HelloWorldPlugin.ftl (added)
• build/classes/plugin/examples/portal (added)
• build/classes/plugin/examples/portal/PortalIntegrationPlugin.class (added)
• build/classes/plugin/examples/portal/PortalIntegrationPlugin.ftl (added)
• build/classes/plugin/examples/switchmacro (added)
• build/classes/plugin/examples/switchmacro/SwitchPlugin.class (added)
• build/classes/plugin/examples/switchmacro/SwitchPlugin.ftl (added)
• build/classes/test (added)
• build/classes/test/screen (added)
• conf (added)
• generated (added)
• generated/java (added)
• generated/java/MolgenisServlet.java (added)
• generated/java/gims (added)
• generated/java/gims/R (added)
• generated/java/gims/R/Batch.R (added)
• generated/java/gims/R/Location.R (added)
• generated/java/gims/R/Nanodrop.R (added)
• generated/java/gims/R/Sample.R (added)
• generated/java/gims/R/SampleProperties.R (added)
• generated/java/gims/R/SampleSheet.R (added)
• generated/java/gims/SoapApi.java (added)
• generated/java/gims/data (added)
• generated/java/gims/data/CsvReaderFactory.java (added)
• generated/java/gims/data/InMemoryDatabase.java (added)
• generated/java/gims/data/JDBCDatabase.java (added)
• generated/java/gims/data/csv (added)
• generated/java/gims/data/csv/BatchCsvReader.java (added)
• generated/java/gims/data/csv/LocationCsvReader.java (added)
• generated/java/gims/data/csv/NanodropCsvReader.java (added)
• generated/java/gims/data/csv/SampleCsvReader.java (added)
• generated/java/gims/data/csv/SamplePropertiesCsvReader.java (added)
• generated/java/gims/data/csv/SampleSheetCsvReader.java (added)
• generated/java/gims/data/list (added)
• generated/java/gims/data/list/BatchList.java (added)
• generated/java/gims/data/list/LocationList.java (added)
• generated/java/gims/data/list/NanodropList.java (added)
• generated/java/gims/data/list/SampleList.java (added)
• generated/java/gims/data/list/SamplePropertiesList.java (added)
• generated/java/gims/data/list/SampleSheetList.java (added)
• generated/java/gims/data/mappers (added)
• generated/java/gims/data/mappers/BatchMapper.java (added)
• generated/java/gims/data/mappers/LocationMapper.java (added)
• generated/java/gims/data/mappers/NanodropMapper.java (added)
• generated/java/gims/data/mappers/SampleMapper.java (added)
• generated/java/gims/data/mappers/SamplePropertiesMapper.java (added)
• generated/java/gims/data/mappers/SampleSheetMapper.java (added)
• generated/java/gims/data/types (added)
• generated/java/gims/data/types/Batch.java (added)
• generated/java/gims/data/types/Location.java (added)
• generated/java/gims/data/types/Nanodrop.java (added)
• generated/java/gims/data/types/Sample.java (added)
• generated/java/gims/data/types/SampleProperties.java (added)
• generated/java/gims/data/types/SampleSheet.java (added)
• generated/java/gims/html (added)
• generated/java/gims/html/BatchHtmlForm.java (added)
• generated/java/gims/html/LocationHtmlForm.java (added)
• generated/java/gims/html/NanodropHtmlForm.java (added)
• generated/java/gims/html/SampleHtmlForm.java (added)
• generated/java/gims/html/SamplePropertiesHtmlForm.java (added)
• generated/java/gims/html/SampleSheetHtmlForm.java (added)
• generated/java/gims/screen (added)
• generated/java/gims/screen/MainMenu.java (added)
• generated/java/gims/screen/main (added)
• generated/java/gims/screen/main/Batch (added)
• generated/java/gims/screen/main/Batch/SampleSheetForm.java (added)
• generated/java/gims/screen/main/BatchForm.java (added)
• generated/java/gims/screen/main/Location (added)
• generated/java/gims/screen/main/Location/SampleForm.java (added)
• generated/java/gims/screen/main/LocationForm.java (added)
• generated/java/gims/screen/main/Sample (added)
• generated/java/gims/screen/main/Sample/LocationForm.java (added)
• generated/java/gims/screen/main/Sample/NanodropForm.java (added)
• generated/java/gims/screen/main/Sample/SamplePropertiesForm.java (added)
• generated/java/gims/screen/main/Sample/SampleSheetForm.java (added)
• generated/java/gims/screen/main/SampleForm.java (added)
• generated/java/gims/screen/main/SamplePropertiesForm.java (added)
• generated/java/gims/screen/main/SampleSheet (added)
• generated/java/gims/screen/main/SampleSheet/BatchForm.java (added)
• generated/java/gims/screen/main/SampleSheetForm.java (added)
• generated/java/gims/source.R (added)
• generated/java/gims/tools (added)
• generated/java/gims/tools/CopyMemoryToDatabase.java (added)
• generated/java/gims/tools/CsvExport.java (added)
• generated/java/gims/tools/CsvImport.java (added)
• generated/java/gims/tools/CsvImportByName.java (added)
• generated/java/test (added)
• generated/java/test/screen (added)
• generated/sql (added)
• generated/sql/count_per_entity.sql (added)
• generated/sql/count_per_table.sql (added)
• generated/sql/create_tables.sql (added)
• gims_db.xml (added)
• gims_ui.xml (added)
• handwritten (added)
• handwritten/java (added)
• handwritten/java/MolgenisExtractModel.java (added)
• handwritten/java/MolgenisGenerate.java (added)
• handwritten/java/MolgenisUpdateDatabase.java (added)
• handwritten/java/README.txt (added)
• handwritten/java/TestMultirowPsql.java (added)
• molgenis.properties (added)
• nbproject (added)
• nbproject/ant-deploy.xml (added)
• nbproject/build-impl.xml (added)
• nbproject/genfiles.properties (added)
• nbproject/project.properties (added)
• nbproject/project.xml (added)