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Changeset 2627

Timestamp:

02/05/10 16:54:18 (2 years ago)

Author:

mdijkstra

Message:

Location:

molgenis_projects/cilairdb

Files:

: 392 added

.classpath (added)
.project (added)
.settings (added)
.settings/org.eclipse.core.resources.prefs (added)
.settings/org.eclipse.jdt.ui.prefs (added)
.settings/org.eclipse.jst.common.project.facet.core.prefs (added)
.settings/org.eclipse.ltk.core.refactoring.prefs (added)
.settings/org.eclipse.wst.common.component (added)
.settings/org.eclipse.wst.common.project.facet.core.xml (added)
META-INF (added)
META-INF/MANIFEST.MF (added)
README.txt (added)
TODO.txt (added)
WebContent (added)
WebContent/META-INF (added)
WebContent/META-INF/MANIFEST.MF (added)
WebContent/META-INF/context.xml (added)
WebContent/WEB-INF (added)
WebContent/WEB-INF/lib (added)
WebContent/WEB-INF/web.xml (added)
WebContent/about.html (added)
WebContent/doc (added)
WebContent/doc/classmodel.html (added)
WebContent/doc/entity-uml-diagram.dot (added)
WebContent/doc/entity-uml-diagram.dot.png (added)
WebContent/doc/entity-uml-minimal-diagram.dot (added)
WebContent/doc/entity-uml-minimal-diagram.dot.png (added)
WebContent/doc/entitymodel.html (added)
WebContent/doc/fileformat.html (added)
WebContent/doc/objectmodel-uml-diagram.dot (added)
WebContent/doc/objectmodel-uml-diagram.dot.png (added)
WebContent/doc/objectmodel-uml-diagram.dot.svg (added)
WebContent/doc/objectmodel.html (added)
WebContent/doc/tabledoc.html (added)
WebContent/doc/textUML.txt (added)
WebContent/generated-doc (added)
WebContent/generated-doc/entity-uml-minimal-diagram.dot (added)
WebContent/generated-doc/entity-uml-minimal-diagram.dot.png (added)
WebContent/generated-doc/entitymodel.html (added)
WebContent/generated-doc/fileformat.html (added)
WebContent/generated-doc/objectmodel-uml-diagram.dot (added)
WebContent/generated-doc/objectmodel-uml-diagram.dot.png (added)
WebContent/generated-doc/objectmodel-uml-diagram.dot.svg (added)
WebContent/generated-doc/objectmodel.html (added)
WebContent/generated-doc/tabledoc.html (added)
WebContent/generated-doc/textUML.txt (added)
WebContent/generated-res (added)
WebContent/generated-res/css (added)
WebContent/generated-res/css/colors.css (added)
WebContent/generated-res/css/colors_blue.css (added)
WebContent/generated-res/css/colors_blue2.css (added)
WebContent/generated-res/css/colors_bluegrey.css (added)
WebContent/generated-res/css/colors_grey.css (added)
WebContent/generated-res/css/colors_maroon.css (added)
WebContent/generated-res/css/data.css (added)
WebContent/generated-res/css/dateinput.css (added)
WebContent/generated-res/css/dateipnut.css (added)
WebContent/generated-res/css/main.css (added)
WebContent/generated-res/css/menu.css (added)
WebContent/generated-res/css/xrefinput.css (added)
WebContent/generated-res/img (added)
WebContent/generated-res/img/_logo_molgenis.gif (added)
WebContent/generated-res/img/_logo_molgenis_old.gif (added)
WebContent/generated-res/img/cancel.png (added)
WebContent/generated-res/img/close.png (added)
WebContent/generated-res/img/delete.png (added)
WebContent/generated-res/img/deselect.png (added)
WebContent/generated-res/img/deselectall.png (added)
WebContent/generated-res/img/down.png (added)
WebContent/generated-res/img/download.png (added)
WebContent/generated-res/img/editview.gif (added)
WebContent/generated-res/img/exit.bmp (added)
WebContent/generated-res/img/filter.png (added)
WebContent/generated-res/img/first.png (added)
WebContent/generated-res/img/info.png (added)
WebContent/generated-res/img/last.png (added)
WebContent/generated-res/img/limit.png (added)
WebContent/generated-res/img/listview.png (added)
WebContent/generated-res/img/logo_molgenis.gif (added)
WebContent/generated-res/img/new.png (added)
WebContent/generated-res/img/next.png (added)
WebContent/generated-res/img/none.png (added)
WebContent/generated-res/img/open.png (added)
WebContent/generated-res/img/prev.png (added)
WebContent/generated-res/img/pulldown.gif (added)
WebContent/generated-res/img/recordview.png (added)
WebContent/generated-res/img/reset.png (added)
WebContent/generated-res/img/rowStart.png (added)
WebContent/generated-res/img/rowStop.png (added)
WebContent/generated-res/img/save.png (added)
WebContent/generated-res/img/select.png (added)
WebContent/generated-res/img/sort_asc.gif (added)
WebContent/generated-res/img/sort_desc.gif (added)
WebContent/generated-res/img/up.png (added)
WebContent/generated-res/img/update.gif (added)
WebContent/generated-res/img/upload.png (added)
WebContent/generated-res/scripts (added)
WebContent/generated-res/scripts/Copy of datetimeinput.js (added)
WebContent/generated-res/scripts/Copy of mrefinput.js (added)
WebContent/generated-res/scripts/all.js (added)
WebContent/generated-res/scripts/dateinput.js (added)
WebContent/generated-res/scripts/datetimeinput.js (added)
WebContent/generated-res/scripts/menu.js (added)
WebContent/generated-res/scripts/mrefinput.js (added)
WebContent/generated-res/scripts/popup.js (added)
WebContent/generated-res/scripts/rest.js (added)
WebContent/generated-res/scripts/textinput.js (added)
WebContent/generated-res/scripts/xrefinput.js (added)
WebContent/index.html (added)
WebContent/res (added)
WebContent/res/css (added)
WebContent/res/css/colors.css (added)
WebContent/res/css/colors_blue.css (added)
WebContent/res/css/colors_grey.css (added)
WebContent/res/css/colors_maroon.css (added)
WebContent/res/css/data.css (added)
WebContent/res/css/dateinput.css (added)
WebContent/res/css/dateipnut.css (added)
WebContent/res/css/main.css (added)
WebContent/res/css/menu.css (added)
WebContent/res/css/xrefinput.css (added)
WebContent/res/img (added)
WebContent/res/img/_logo_molgenis.gif (added)
WebContent/res/img/cancel.png (added)
WebContent/res/img/close.png (added)
WebContent/res/img/delete.png (added)
WebContent/res/img/deselect.png (added)
WebContent/res/img/deselectall.png (added)
WebContent/res/img/download.png (added)
WebContent/res/img/editview.gif (added)
WebContent/res/img/exit.bmp (added)
WebContent/res/img/filter.png (added)
WebContent/res/img/first.png (added)
WebContent/res/img/last.png (added)
WebContent/res/img/limit.png (added)
WebContent/res/img/listview.png (added)
WebContent/res/img/logo_molgenis.gif (added)
WebContent/res/img/new.png (added)
WebContent/res/img/next.png (added)
WebContent/res/img/none.png (added)
WebContent/res/img/open.png (added)
WebContent/res/img/prev.png (added)
WebContent/res/img/pulldown.gif (added)
WebContent/res/img/recordview.png (added)
WebContent/res/img/reset.png (added)
WebContent/res/img/save.png (added)
WebContent/res/img/select.png (added)
WebContent/res/img/sort_asc.gif (added)
WebContent/res/img/sort_desc.gif (added)
WebContent/res/img/update.gif (added)
WebContent/res/img/upload.png (added)
WebContent/res/img/web.xml (added)
WebContent/res/scripts (added)
WebContent/res/scripts/all.js (added)
WebContent/res/scripts/dateinput.js (added)
WebContent/res/scripts/datetimeinput.js (added)
WebContent/res/scripts/menu.js (added)
WebContent/res/scripts/mrefinput.js (added)
WebContent/res/scripts/popup.js (added)
WebContent/res/scripts/rest.js (added)
WebContent/res/scripts/xrefinput.js (added)
build (added)
build/classes (added)
cilair_db.xml (added)
cilair_ui.xml (added)
data (added)
data/ewa_lps (added)
data/ewa_lps/08an70_batch2_ProteinSummarynew_control.csv (added)
data/ewa_lps/08an70_batch3_ProteinSummarynew_control.csv (added)
data/ewa_lps/08an70batch01_ProteinSummarynew_control.csv (added)
data/ewa_lps/a8AN70batch4_ProteinSummarynew.csv (added)
data/ewa_lps/a8AN70batch5_ProteinSummarynew.csv (added)
data/ewa_lps/a8AN70batch6_ProteinSummarynew.csv (added)
data/ewa_lps/old (added)
data/ewa_lps/old/AN70b1_ProteinSummary.xls (added)
data/ewa_lps/old/AN70b2_ProteinSummary.xls (added)
data/ewa_lps/old/AN70b6_ProteinSummary.xls (added)
data/ewa_lps/old/cilair AN70 for metacore.xls (added)
data/ewa_lps/old/control dish 1.csv (added)
data/ewa_lps/old/control dish 2.csv (added)
data/ewa_lps/old/lps dish 6.csv (added)
data/protein_ratio_files_cilair_paper (added)
data/protein_ratio_files_cilair_paper/MARTIJNS_testfile.csv (added)
data/protein_ratio_files_cilair_paper/SecretomeP.csv (added)
data/protein_ratio_files_cilair_paper/VOORBEELD_Copy of control dish 1_VOORBEELD.csv (added)
data/protein_ratio_files_cilair_paper/control dish 1.csv (added)
data/protein_ratio_files_cilair_paper/control dish 2.csv (added)
data/protein_ratio_files_cilair_paper/control dish 3.csv (added)
data/protein_ratio_files_cilair_paper/control_corrected.csv (added)
data/protein_ratio_files_cilair_paper/insulin dish 1.csv (added)
data/protein_ratio_files_cilair_paper/insulin dish 2.csv (added)
data/protein_ratio_files_cilair_paper/insulin dish 3.csv (added)
data/protein_ratio_files_cilair_paper/insulin_corrected.csv (added)
data/protein_ratio_files_cilair_paper/protocol.txt (added)
data/saed_lps_PA (added)
data/saed_lps_PA/09an13_batch1_medHPA_ProteinSummary_contam.csv (added)
data/saed_lps_PA/09an13_batch2_medHPA_ProteinSummary_contam.csv (added)
data/saed_lps_PA/09an13_batch3_lysHPA_ProteinSummary_contam.csv (added)
data/saed_lps_PA/09an13_batch4_lysLPAwithmodon_ProteinSummary_contam.csv (added)
data/saed_lps_PA/original (added)
data/saed_lps_PA/original/09an13_batch1_medHPA_ProteinSummary.csv (added)
data/saed_lps_PA/original/09an13_batch1_medHPA_ProteinSummary_md.csv (added)
data/saed_lps_PA/original/09an13_batch2_medLPA_ProteinSummary.csv (added)
data/saed_lps_PA/original/09an13_batch2_medLPA_ProteinSummary_md.csv (added)
data/saed_lps_PA/original/09an13_batch3_lysHPA_ProteinSummary.txt (added)
data/saed_lps_PA/original/09an13_batch4_lysLPAwithmodon_ProteinSummary.txt (added)
data/secP_march09 (added)
data/secP_march09/uniprot_sprot_human_secp_scan.csv (added)
data/secretomeP (added)
data/secretomeP/uniprot_sprot_human_secp_scan.csv (added)
example_data (added)
generated (added)
generated/java (added)
generated/java/app (added)
generated/java/app/CsvExport.java (added)
generated/java/app/CsvImport.java (added)
generated/java/app/InMemoryDatabase.java (added)
generated/java/app/JDBCDatabase.java (added)
generated/java/app/JDBCMetaDatabase.java (added)
generated/java/app/servlet (added)
generated/java/app/servlet/ContextListener.java (added)
generated/java/app/servlet/MolgenisServlet.java (added)
generated/java/app/servlet/SoapApi.java (added)
generated/java/app/servlet/source.R (added)
generated/java/app/ui (added)
generated/java/app/ui/AdminMenu.java (added)
generated/java/app/ui/AnalysisForm.java (added)
generated/java/app/ui/AnalysisMenuMenu.java (added)
generated/java/app/ui/CVPlugin.java (added)
generated/java/app/ui/CalculateCorrelationPlugin.java (added)
generated/java/app/ui/CultureStepsForm.java (added)
generated/java/app/ui/DishesForm.java (added)
generated/java/app/ui/ExperimentsForm.java (added)
generated/java/app/ui/ExperimentsMenuMenu.java (added)
generated/java/app/ui/FillResultPlugin.java (added)
generated/java/app/ui/GelsForm.java (added)
generated/java/app/ui/HistogramRatiosPlugin.java (added)
generated/java/app/ui/MainMenu.java (added)
generated/java/app/ui/Molgenis_headerPlugin.java (added)
generated/java/app/ui/PatientsForm.java (added)
generated/java/app/ui/ProteinsForm.java (added)
generated/java/app/ui/ProtocolTypesForm.java (added)
generated/java/app/ui/ProtocolsForm.java (added)
generated/java/app/ui/RatioChangePlugin.java (added)
generated/java/app/ui/ResultFiguresForm.java (added)
generated/java/app/ui/ResultForm.java (added)
generated/java/app/ui/SampleTypesForm.java (added)
generated/java/app/ui/SamplesForm.java (added)
generated/java/app/ui/SecretomeValuesForm.java (added)
generated/java/cilair (added)
generated/java/cilair/CultureStep.java (added)
generated/java/cilair/Dish.java (added)
generated/java/cilair/Experiment.java (added)
generated/java/cilair/Gel.java (added)
generated/java/cilair/Patient.java (added)
generated/java/cilair/Protein.java (added)
generated/java/cilair/Protocol.java (added)
generated/java/cilair/ProtocolType.java (added)
generated/java/cilair/R (added)
generated/java/cilair/R/CultureStep.R (added)
generated/java/cilair/R/Dish.R (added)
generated/java/cilair/R/Experiment.R (added)
generated/java/cilair/R/Gel.R (added)
generated/java/cilair/R/Patient.R (added)
generated/java/cilair/R/Protein.R (added)
generated/java/cilair/R/Protocol.R (added)
generated/java/cilair/R/ProtocolType.R (added)
generated/java/cilair/R/Result.R (added)
generated/java/cilair/R/ResultFigures.R (added)
generated/java/cilair/R/Sample.R (added)
generated/java/cilair/R/SampleType.R (added)
generated/java/cilair/R/SecretomeValue.R (added)
generated/java/cilair/Result.java (added)
generated/java/cilair/ResultFigures.java (added)
generated/java/cilair/Sample.java (added)
generated/java/cilair/SampleType.java (added)
generated/java/cilair/SecretomeValue.java (added)
generated/java/cilair/csv (added)
generated/java/cilair/csv/CultureStepCsvReader.java (added)
generated/java/cilair/csv/DishCsvReader.java (added)
generated/java/cilair/csv/ExperimentCsvReader.java (added)
generated/java/cilair/csv/GelCsvReader.java (added)
generated/java/cilair/csv/PatientCsvReader.java (added)
generated/java/cilair/csv/ProteinCsvReader.java (added)
generated/java/cilair/csv/ProtocolCsvReader.java (added)
generated/java/cilair/csv/ProtocolTypeCsvReader.java (added)
generated/java/cilair/csv/ResultCsvReader.java (added)
generated/java/cilair/csv/ResultFiguresCsvReader.java (added)
generated/java/cilair/csv/SampleCsvReader.java (added)
generated/java/cilair/csv/SampleTypeCsvReader.java (added)
generated/java/cilair/csv/SecretomeValueCsvReader.java (added)
generated/java/cilair/data (added)
generated/java/cilair/data/csv (added)
generated/java/cilair/data/mappers (added)
generated/java/cilair/data/types (added)
generated/java/cilair/db (added)
generated/java/cilair/db/CultureStepMapper.java (added)
generated/java/cilair/db/DishMapper.java (added)
generated/java/cilair/db/ExperimentMapper.java (added)
generated/java/cilair/db/GelMapper.java (added)
generated/java/cilair/db/PatientMapper.java (added)
generated/java/cilair/db/ProteinMapper.java (added)
generated/java/cilair/db/ProtocolMapper.java (added)
generated/java/cilair/db/ProtocolTypeMapper.java (added)
generated/java/cilair/db/ResultFiguresMapper.java (added)
generated/java/cilair/db/ResultMapper.java (added)
generated/java/cilair/db/SampleMapper.java (added)
generated/java/cilair/db/SampleTypeMapper.java (added)
generated/java/cilair/db/SecretomeValueMapper.java (added)
generated/java/cilair/html (added)
generated/java/servlet (added)
generated/java/tools (added)
generated/java/ui (added)
generated/java/ui/R (added)
generated/java/ui/data (added)
generated/java/ui/data/mappers (added)
generated/java/ui/data/types (added)
generated/java/ui/screen (added)
generated/java/ui/screen/Analysis (added)
generated/java/ui/screen/Analysis/ExperimentsMenu (added)
generated/java/ui/screen/Experiments (added)
generated/java/ui/screen/Experiments/ExperimentsMenu (added)
generated/java/ui/screen/Experiments/ExperimentsMenu/Dishes (added)
generated/java/ui/screen/TopMenu (added)
generated/java/ui/screen/TopMenu/Main (added)
generated/java/ui/screen/TopMenu/Main/Analysis (added)
generated/java/ui/screen/TopMenu/Main/Analysis/ExperimentsMenu (added)
generated/java/ui/screen/TopMenu/Main/Experiments (added)
generated/java/ui/screen/TopMenu/Main/Experiments/ExperimentsMenu (added)
generated/java/ui/screen/TopMenu/Main/Experiments/ExperimentsMenu/Dishes (added)
generated/java/ui/screen/TopMenu/Main/admin (added)
generated/java/ui/screen/admin (added)
generated/java/ui/tools (added)
generated/sql (added)
generated/sql/alter_tables.sql (added)
generated/sql/count_per_entity.sql (added)
generated/sql/count_per_table.sql (added)
generated/sql/create_tables.sql (added)
generated/sql/insert_metadata.sql (added)
handwritten (added)
handwritten/java (added)
handwritten/java/MolgenisExtractModel.java (added)
handwritten/java/MolgenisGenerate.java (added)
handwritten/java/MolgenisLoadExampleData.java (added)
handwritten/java/MolgenisUpdateDatabase.java (added)
handwritten/java/README.txt (added)
handwritten/java/decorators (added)
handwritten/java/decorators/DishMapperDecorator.java (added)
handwritten/java/importers (added)
handwritten/java/importers/ImportProteinList.java (added)
handwritten/java/importers/ImportSecretomeP.java (added)
handwritten/java/log4j.properties (added)
handwritten/java/plugin (added)
handwritten/java/plugin/examples (added)
handwritten/java/plugin/examples/dbquery (added)
handwritten/java/plugin/examples/helloworld (added)
handwritten/java/plugin/examples/portal (added)
handwritten/java/plugin/examples/switchmacro (added)
handwritten/java/plugin/query (added)
handwritten/java/plugin/query/meta (added)
handwritten/java/plugin/query/meta/imp (added)
handwritten/java/plugin/query/view (added)
handwritten/java/plugins (added)
handwritten/java/plugins/computeresult (added)
handwritten/java/plugins/computeresult/ComputeResult.ftl (added)
handwritten/java/plugins/computeresult/ComputeResult.java (added)
handwritten/java/plugins/computeresult/Fill_Result_Table_from_Dish.R (added)
handwritten/java/plugins/correlation (added)
handwritten/java/plugins/correlation/CorrelationPlot_from_Dish.R (added)
handwritten/java/plugins/correlation/CorrelationPlugin.ftl (added)
handwritten/java/plugins/correlation/CorrelationPlugin.java (added)
handwritten/java/plugins/header (added)
handwritten/java/plugins/header/MolgenisHeader.ftl (added)
handwritten/java/plugins/header/MolgenisHeader.java (added)
handwritten/java/plugins/histogramcv (added)
handwritten/java/plugins/histogramcv/HistogramCVPlots.R (added)
handwritten/java/plugins/histogramcv/HistogramCVPlugin.ftl (added)
handwritten/java/plugins/histogramcv/HistogramCVPlugin.java (added)
handwritten/java/plugins/histogramratios (added)
handwritten/java/plugins/histogramratios/HistogramRatiosPlots_from_Dish.R (added)
handwritten/java/plugins/histogramratios/HistogramRatiosPlugin.ftl (added)
handwritten/java/plugins/histogramratios/HistogramRatiosPlugin.java (added)
handwritten/java/plugins/ratiochange (added)
handwritten/java/plugins/ratiochange/RatioChangePlot.R (added)
handwritten/java/plugins/ratiochange/RatioChangePlugin.ftl (added)
handwritten/java/plugins/ratiochange/RatioChangePlugin.java (added)
handwritten/java/topmenu (added)
molgenis.dtd (added)
molgenis.properties (added)
molgenis.xsd (added)
molgenis_db.xml (added)
molgenis_ui.xml (added)

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Changeset 2627

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