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Changeset 2642
- Timestamp:
- 02/16/10 09:50:52 (2 years ago)
- Location:
- molgenis_projects/col7a1
- Files:
-
- 3 edited
-
molgenis.properties (modified) (1 diff)
-
molgenis_db.xml (modified) (3 diffs)
-
molgenis_ui.xml (modified) (1 diff)
Legend:
- Unmodified
- Added
- Removed
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molgenis_projects/col7a1/molgenis.properties
r2478 r2642 24 24 db_password = molgenis 25 25 db_uri= jdbc:mysql://localhost/col7a1db 26 27 example_data_dir = example_data 26 28 27 29 # PostgreSQL: experimental! -
molgenis_projects/col7a1/molgenis_db.xml
r2623 r2642 18 18 <field name="number" type="number" description="Consecutive number of exon inside of the gene."/> 19 19 <field name="name" description="Name of the exon."/> 20 <field name="position" type="number" description="Position of the exon within the gene"/> 20 <field name="cdna_position" type="number" description="cDNA position of the exon within the gene."/> 21 <field name="gdna_position" type="number" description="gDNA position of the exon within the gene."/> 21 22 <field name="length" type="number" description="Length of the exon in bp."/> 22 23 <field name="gene" type="xref" xref_field="Gene.id" xref_label="name"/> … … 56 57 <field name="publication" type="xref" xref_field="Publication.id" xref_label="title"/> 57 58 </entity> 58 <entity name="I _F">59 <entity name="IF"> 59 60 <description>Immunofluorescence staining intensity of type VII 60 61 collagen at the basement membrane zone in non-involved skin with … … 71 72 <field name="description" type="text" /> 72 73 </entity> 73 <entity name="E _M">74 <entity name="EM"> 74 75 <field name="id" type="autoid" hidden="true"/> 75 76 <field name="patient" type="xref" xref_field="Patient.id" xref_label="number" /> 76 <field name="value"/> 77 <field name="Anchoring_fibers" nillable="true"/> 78 <field name="Hemi_desmosomes" nillable="true"/> 79 <field name="description" type="text"/> 77 <field name="Anchoring_fibrils" nillable="true"/> 78 <field name="description" type="text" nillable="true"/> 80 79 </entity> 81 80 <entity name="Mutation"> 82 81 <description>Part of an exon that has its codon changed.</description> 83 82 <field name="id" type="autoid" hidden="true" description="Primary key."/> 84 <field name="name" description="Name. For example c.14C>G."/>85 83 <field name="position" type="number" description="Position in bp inside of the exon."/> 86 84 <field name="length" type="number" description="Length of the mutation."/> 87 85 <field name="type" type="enum" enum_options="[ins,del]"/> 88 86 <field name="codon_change" description="A description of the change of the codon."/> 89 <field name="cdna_notation" description="cDNA notation of the mutation. Should be calculated automatically."/>87 <field name="cdna_notation" description="cDNA notation of the mutation. For example c.14C>G."/> 90 88 <field name="gdna_notation" description="gDNA notation of the mutation. Should be calculated automatically."/> 91 <field name="rna_notation" description="RNA notation of the mutation. Should be calculated automatically."/>92 89 <field name="aa_notation" description="Amino acid notation of the mutation. Should be calculated automatically."/> 93 90 <field name="exon" type="xref" xref_field="Exon.id" xref_label="name" description="Exon. Should be calculated automatically."/> -
molgenis_projects/col7a1/molgenis_ui.xml
r2623 r2642 5 5 --> 6 6 <molgenis name="col7a1"> 7 <menu name="Display"> 8 <form name="GeneView" entity="Gene" readonly="true"> 9 <form name="ExonView" entity="Exon" readonly="true"/> 10 <form name="MutationView" entity="Mutation" readonly="true"> 11 <form name="PhenotypeView" entity="Phenotype" readonly="true"/> 12 <form name="PatientView" entity="Patient" readonly="true"> 13 <form name="PublicationView" entity="Publication" readonly="true"/> 14 <form name="IFView" entity="I_F" readonly="true"/> 15 <form name="EMView" entity="E_M" readonly="true"/> 7 <plugin name="MolgenisHeader" type="plugins.header.MolgenisHeader"/> 8 <menu name="View"> 9 <form name="Genes" entity="Gene" readonly="true"> 10 <menu name="ExonMenu"> 11 <form name="Exons" entity="Exon" readonly="true"/> 12 <form name="Mutations" entity="Mutation" readonly="true"> 13 <form name="Phenotypes" entity="Phenotype" readonly="true"/> 16 14 </form> 17 </form> 15 <form name="Patients" entity="Patient" readonly="true"> 16 <form name="Publications" entity="Publication" readonly="true"/> 17 <form name="I_Fs" entity="I_F" readonly="true"/> 18 <form name="E_Ms" entity="E_M" readonly="true"/> 19 </form> 20 </menu> 18 21 </form> 19 22 <menu name="Edit">
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