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Changeset 2646
- Timestamp:
- 02/18/10 09:35:08 (2 years ago)
- Location:
- molgenis_projects/col7a1
- Files:
-
- 1 added
- 3 edited
-
WebContent/WEB-INF/web.xml (modified) (1 diff)
-
handwritten/java/LoadExamples.java (added)
-
molgenis_db.xml (modified) (2 diffs)
-
molgenis_ui.xml (modified) (2 diffs)
Legend:
- Unmodified
- Added
- Removed
-
molgenis_projects/col7a1/WebContent/WEB-INF/web.xml
r2478 r2646 55 55 <url-pattern>/download/*</url-pattern> 56 56 </servlet-mapping> 57 58 <security-constraint> 59 <web-resource-collection> 60 <web-resource-name>Whole app</web-resource-name> 61 <url-pattern>*.do</url-pattern> 62 </web-resource-collection> 63 <auth-constraint> 64 <role-name>molgenis4eb</role-name> 65 </auth-constraint> 66 </security-constraint> 67 68 <login-config> 69 <auth-method>BASIC</auth-method> 70 <realm-name>Col7a1 database</realm-name> 71 </login-config> 72 73 <security-role> 74 <description> 75 The role that is required to log in to the application 76 </description> 77 <role-name>molgenis4eb</role-name> 78 </security-role> 79 57 80 </web-app> -
molgenis_projects/col7a1/molgenis_db.xml
r2642 r2646 52 52 <field name="age" description="Age of patient in years."/> 53 53 <field name="diagnosis" description="Diagnosis for the patient."/> 54 <field name="alive" type="bool" default="true" />54 <field name="alive" type="bool" default="true" description="Is patient still alive?"/> 55 55 <field name="mutation1" type="xref" xref_field="Mutation.id" xref_label="cdna_notation" nillable="true"/> 56 56 <field name="mutation2" type="xref" xref_field="Mutation.id" xref_label="cdna_notation" nillable="true"/> 57 57 <field name="publication" type="xref" xref_field="Publication.id" xref_label="title"/> 58 58 </entity> 59 <entity name="IF"> 60 <description>Immunofluorescence staining intensity of type VII 61 collagen at the basement membrane zone in non-involved skin with 62 monoclonal antibody LH7:2 against the NC1 domain and monoclonal 63 antibody 2Q633 against NC2 domain.</description> 59 <entity name="I_F"> 60 <description>Immunofluorescence staining intensity of collagen type VII at the basement membrane zone in non-involved skin with different antibodies.</description> 64 61 <field name="id" type="autoid" hidden="true" description="Primary key." /> 62 <field name="number" description="Unique number used mainly for referencing." unique="true" readonly="true" default="automatic value"/> 65 63 <field name="patient" type="xref" xref_field="Patient.id" xref_label="number" nillable="true" /> 66 <field name="test_LH72" nillable="true" description="Staining intensity for LH72." /> 67 <field name="test_2Q633" nillable="true" description="Staining intensity for 2Q633." /> 68 <field name="keratine_14" nillable="true" /> 69 <field name="BP180_1D1" nillable="true" /> 70 <field name="Niceine_GB3" nillable="true" /> 71 <field name="Collagen" nillable="true" /> 64 <field name="collagen_type_vii" nillable="true" /> 72 65 <field name="description" type="text" /> 73 66 </entity> 74 <entity name="EM"> 75 <field name="id" type="autoid" hidden="true"/> 76 <field name="patient" type="xref" xref_field="Patient.id" xref_label="number" /> 77 <field name="Anchoring_fibrils" nillable="true"/> 78 <field name="description" type="text" nillable="true"/> 79 </entity> 67 <entity name="Antibody"> 68 <description>Antibody used for immunofluorescence.</description> 69 <field name="id" type="autoid" hidden="true" description="Primary key."/> 70 <field name="name" description="Name of the antibody."/> 71 </entity> 72 <entity name="I_F_Antibody"> 73 <description>Value of an antibody used in an immunofluorescence.</description> 74 <field name="id" type="autoid" hidden="true"/> 75 <field name="i_f" type="xref" xref_field="I_F.id" xref_label="number"/> 76 <field name="antibody" type="xref" xref_field="Antibody.id" xref_label="name"/> 77 <field name="value" type="enum" enum_options="normal, reduced, strongly reduced, increased, strongly increased"/> 78 </entity> 79 <entity name="E_M"> 80 <field name="id" type="autoid" hidden="true"/> 81 <field name="patient" type="xref" xref_field="Patient.id" xref_label="number" /> 82 <field name="Anchoring_fibrils" nillable="true"/> 83 <field name="description" type="text" nillable="true"/> 84 </entity> 80 85 <entity name="Mutation"> 81 86 <description>Part of an exon that has its codon changed.</description> … … 83 88 <field name="position" type="number" description="Position in bp inside of the exon."/> 84 89 <field name="length" type="number" description="Length of the mutation."/> 85 <field name="type " type="enum" enum_options="[ins,del]"/>90 <field name="type_" type="enum" enum_options="[ins,del]"/> 86 91 <field name="codon_change" description="A description of the change of the codon."/> 87 92 <field name="cdna_notation" description="cDNA notation of the mutation. For example c.14C>G."/> -
molgenis_projects/col7a1/molgenis_ui.xml
r2642 r2646 15 15 <form name="Patients" entity="Patient" readonly="true"> 16 16 <form name="Publications" entity="Publication" readonly="true"/> 17 <form name="I_Fs" entity="I_F" readonly="true"/> 18 <form name="E_Ms" entity="E_M" readonly="true"/> 17 <form name="IFs" entity="I_F" readonly="true"/> 18 <form name="Antibodies" entity="I_F_Antibody" readonly="true"/> 19 <form name="EMs" entity="E_M" readonly="true"/> 19 20 </form> 20 21 </menu> … … 27 28 <form name="Phenotype" entity="Phenotype"/> 28 29 <form name="Publication" entity="Publication"/> 29 <form name="I_F" entity="I_F"/> 30 <form name="E_M" entity="E_M"/> 30 <form name="Antibody" entity="Antibody"> 31 <form name="AntibodyValue" entity="I_F_Antibody"/> 32 </form> 33 <form name="IF" entity="I_F"/> 34 <form name="EM" entity="E_M"/> 31 35 </menu> 32 36 </menu>
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