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Changeset 2660
- Timestamp:
- 02/25/10 18:29:03 (2 years ago)
- Location:
- molgenis_projects/col7a1
- Files:
-
- 2 edited
-
molgenis_db.xml (modified) (7 diffs)
-
molgenis_ui.xml (modified) (3 diffs)
Legend:
- Unmodified
- Added
- Removed
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molgenis_projects/col7a1/molgenis_db.xml
r2646 r2660 16 16 <description>Part of a gene, that gets translated.</description> 17 17 <field name="id" type="autoid" hidden="true" description="Primary key."/> 18 <field name="number " type="number" description="Consecutive number of exon inside of the gene."/>18 <field name="number_" type="number" description="Consecutive number of exon inside of the gene."/> 19 19 <field name="name" description="Name of the exon."/> 20 20 <field name="cdna_position" type="number" description="cDNA position of the exon within the gene."/> … … 22 22 <field name="length" type="number" description="Length of the exon in bp."/> 23 23 <field name="gene" type="xref" xref_field="Gene.id" xref_label="name"/> 24 <field name="proteinDomain" type="xref" xref_field="ProteinDomain.id" xref_label="name"/> 25 </entity> 26 <entity name="ProteinDomain"> 27 <description>A protein domain is a part of protein sequence and structure that can evolve, function, and exist independently of the rest of the protein chain.</description> 28 <field name="id" type="autoid" hidden="true" description="Primary key."/> 29 <field name="name" description="Name of the protein domain. E.g. NC1 domain."/> 30 <field name="superDomain" type="xref" xref_field="ProteinDomain.id" xref_label="name" nillable="true"/> 24 31 </entity> 25 32 <entity name="Publication"> … … 49 56 <entity name="Patient"> 50 57 <field name="id" type="autoid" hidden="true" description="Primary key."/> 51 <field name="number " description="Number of patient."/>58 <field name="number_" description="Number of patient."/> 52 59 <field name="age" description="Age of patient in years."/> 53 60 <field name="diagnosis" description="Diagnosis for the patient."/> … … 60 67 <description>Immunofluorescence staining intensity of collagen type VII at the basement membrane zone in non-involved skin with different antibodies.</description> 61 68 <field name="id" type="autoid" hidden="true" description="Primary key." /> 62 <field name="number " description="Unique number used mainly for referencing." unique="true" readonly="true" default="automatic value"/>63 <field name="patient" type="xref" xref_field="Patient.id" xref_label="number " nillable="true" />69 <field name="number_" description="Unique number used mainly for referencing." unique="true"/> 70 <field name="patient" type="xref" xref_field="Patient.id" xref_label="number_" nillable="true" /> 64 71 <field name="collagen_type_vii" nillable="true" /> 65 72 <field name="description" type="text" /> … … 73 80 <description>Value of an antibody used in an immunofluorescence.</description> 74 81 <field name="id" type="autoid" hidden="true"/> 75 <field name="i_f" type="xref" xref_field="I_F.id" xref_label="number "/>82 <field name="i_f" type="xref" xref_field="I_F.id" xref_label="number_"/> 76 83 <field name="antibody" type="xref" xref_field="Antibody.id" xref_label="name"/> 77 <field name="value" type="enum" enum_options="normal, reduced, strongly reduced, increased, strongly increased"/>84 <field name="value" type="enum" enum_options="normal, slightly reduced, reduced, strongly reduced, slightly increased, increased, strongly increased"/> 78 85 </entity> 79 86 <entity name="E_M"> 80 87 <field name="id" type="autoid" hidden="true"/> 81 <field name="patient" type="xref" xref_field="Patient.id" xref_label="number " />82 <field name=" Anchoring_fibrils" nillable="true"/>88 <field name="patient" type="xref" xref_field="Patient.id" xref_label="number_" /> 89 <field name="anchoring_fibrils" type="enum" enum_options="normal, slightly reduced, reduced, strongly reduced, slightly increased, increased, strongly increased"/> 83 90 <field name="description" type="text" nillable="true"/> 84 91 </entity> … … 87 94 <field name="id" type="autoid" hidden="true" description="Primary key."/> 88 95 <field name="position" type="number" description="Position in bp inside of the exon."/> 89 <field name="length " type="number" description="Length of the mutation."/>96 <field name="length_" type="number" description="Length of the mutation."/> 90 97 <field name="type_" type="enum" enum_options="[ins,del]"/> 91 98 <field name="codon_change" description="A description of the change of the codon."/> … … 98 105 <field name="conservedAA" type="bool" description="Conserved amino acid.? Should be calculated automatically."/> 99 106 <field name="effectOnSplicing" type="bool" description="Predicted effect on splicing? Should be calculated automatically."/> 100 <field name="proteinDomain" description="Protein domain. Should be calculated automatically."/>101 107 <field name="founderMutation" type="bool" description="Founder mutation?"/> 102 108 <field name="population" description="Population if founder mutation."/> -
molgenis_projects/col7a1/molgenis_ui.xml
r2647 r2660 7 7 <plugin name="MolgenisHeader" type="plugins.header.MolgenisHeader"/> 8 8 <menu name="View"> 9 <plugin name="Search" type="plugin.ui.SearchPlugin"/> 10 <!-- 9 11 <form name="Genes" entity="Gene" readonly="true"> 10 12 <menu name="ExonMenu"> … … 22 24 </menu> 23 25 </form> 24 <menu name="Edit"> 26 --> 27 <menu name="Upload"> 25 28 <form name="Gene" entity="Gene"/> 29 <form name="ProteinDomain" entity="ProteinDomain"/> 26 30 <form name="Exon" entity="Exon"/> 27 31 <form name="Mutation" entity="Mutation"/> … … 34 38 <form name="EM" entity="E_M"/> 35 39 </menu> 40 <plugin name="Contact" type="plugin.ui.ContactPlugin"/> 41 <form name="References" entity="Publication" readonly="true"/> 42 <plugin name="Background" type="plugin.ui.BackgroundPlugin"/> 43 <plugin name="Help" type="plugin.ui.HelpPlugin"/> 44 <plugin name="Login" type="plugin.ui.LoginPlugin"/> 36 45 </menu> 37 46 </molgenis>
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