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Changeset 3438

Timestamp:

08/24/10 17:13:04 (18 months ago)

Author:

rwagner

Message:

initial commit

Location:

molgenis_auth

Files:

: 397 added

.classpath (added)
.project (added)
.settings (added)
.settings/org.eclipse.core.resources.prefs (added)
.settings/org.eclipse.jdt.ui.prefs (added)
.settings/org.eclipse.jst.common.project.facet.core.prefs (added)
.settings/org.eclipse.ltk.core.refactoring.prefs (added)
.settings/org.eclipse.wst.common.component (added)
.settings/org.eclipse.wst.common.component.tmp (added)
.settings/org.eclipse.wst.common.project.facet.core.xml (added)
.settings/org.eclipse.wst.ws.service.policy.prefs (added)
README.txt (added)
WebContent (added)
WebContent/META-INF (added)
WebContent/META-INF/MANIFEST.MF (added)
WebContent/META-INF/context.xml (added)
WebContent/META-INF/persistence.xml (added)
WebContent/WEB-INF (added)
WebContent/WEB-INF/directory_page.vm (added)
WebContent/WEB-INF/lib (added)
WebContent/WEB-INF/molgenis-rdf-mapping.n3 (added)
WebContent/WEB-INF/resource_page.vm (added)
WebContent/WEB-INF/root_page.vm (added)
WebContent/WEB-INF/velocity.properties (added)
WebContent/WEB-INF/web.xml (added)
WebContent/about.html (added)
WebContent/doc (added)
WebContent/generated-doc (added)
WebContent/generated-doc/entitymodel.html (added)
WebContent/generated-doc/fileformat.html (added)
WebContent/generated-doc/objectmodel-uml-diagram-summary.dot (added)
WebContent/generated-doc/objectmodel-uml-diagram.dot (added)
WebContent/generated-doc/objectmodel.html (added)
WebContent/generated-doc/tabledoc.html (added)
WebContent/generated-doc/textUML.txt (added)
WebContent/generated-res (added)
WebContent/generated-res/css (added)
WebContent/generated-res/css/colors.css (added)
WebContent/generated-res/css/colors_blue.css (added)
WebContent/generated-res/css/colors_blue2.css (added)
WebContent/generated-res/css/colors_bluegrey.css (added)
WebContent/generated-res/css/colors_grey.css (added)
WebContent/generated-res/css/colors_maroon.css (added)
WebContent/generated-res/css/data.css (added)
WebContent/generated-res/css/dateinput.css (added)
WebContent/generated-res/css/dateipnut.css (added)
WebContent/generated-res/css/main.css (added)
WebContent/generated-res/css/menu.css (added)
WebContent/generated-res/css/xrefinput.css (added)
WebContent/generated-res/img (added)
WebContent/generated-res/img/_logo_molgenis.gif (added)
WebContent/generated-res/img/_logo_molgenis_old.gif (added)
WebContent/generated-res/img/cancel.png (added)
WebContent/generated-res/img/close.png (added)
WebContent/generated-res/img/delete.png (added)
WebContent/generated-res/img/deselect.png (added)
WebContent/generated-res/img/deselectall.png (added)
WebContent/generated-res/img/down.png (added)
WebContent/generated-res/img/download.png (added)
WebContent/generated-res/img/editview.gif (added)
WebContent/generated-res/img/exit.bmp (added)
WebContent/generated-res/img/filter.png (added)
WebContent/generated-res/img/first.png (added)
WebContent/generated-res/img/info.png (added)
WebContent/generated-res/img/last.png (added)
WebContent/generated-res/img/limit.png (added)
WebContent/generated-res/img/listview.png (added)
WebContent/generated-res/img/logo_molgenis.gif (added)
WebContent/generated-res/img/new.png (added)
WebContent/generated-res/img/next.png (added)
WebContent/generated-res/img/none.png (added)
WebContent/generated-res/img/open.png (added)
WebContent/generated-res/img/prev.png (added)
WebContent/generated-res/img/pulldown.gif (added)
WebContent/generated-res/img/recordview.png (added)
WebContent/generated-res/img/reset.png (added)
WebContent/generated-res/img/rowStart.png (added)
WebContent/generated-res/img/rowStop.png (added)
WebContent/generated-res/img/save.png (added)
WebContent/generated-res/img/select.png (added)
WebContent/generated-res/img/sort_asc.gif (added)
WebContent/generated-res/img/sort_desc.gif (added)
WebContent/generated-res/img/up.png (added)
WebContent/generated-res/img/update.gif (added)
WebContent/generated-res/img/upload.png (added)
WebContent/generated-res/scripts (added)
WebContent/generated-res/scripts/Copy of datetimeinput.js (added)
WebContent/generated-res/scripts/Copy of mrefinput.js (added)
WebContent/generated-res/scripts/all.js (added)
WebContent/generated-res/scripts/dateinput.js (added)
WebContent/generated-res/scripts/datetimeinput.js (added)
WebContent/generated-res/scripts/jquery.js (added)
WebContent/generated-res/scripts/jquery.validate.js (added)
WebContent/generated-res/scripts/menu.js (added)
WebContent/generated-res/scripts/mrefinput.js (added)
WebContent/generated-res/scripts/popup.js (added)
WebContent/generated-res/scripts/recoverscroll.js (added)
WebContent/generated-res/scripts/rest.js (added)
WebContent/generated-res/scripts/textinput.js (added)
WebContent/generated-res/scripts/xrefinput.js (added)
WebContent/index.html (added)
WebContent/res (added)
WebContent/res/css (added)
WebContent/res/img (added)
WebContent/res/scripts (added)
WebContent/res/scripts/Copy of datetimeinput.js (added)
WebContent/res/scripts/all.js (added)
WebContent/res/scripts/dateinput.js (added)
WebContent/res/scripts/datetimeinput.js (added)
WebContent/res/scripts/menu.js (added)
WebContent/res/scripts/mrefinput.js (added)
WebContent/res/scripts/popup.js (added)
WebContent/res/scripts/rest.js (added)
WebContent/res/scripts/textinput.js (added)
WebContent/res/scripts/xrefinput.js (added)
WebContent/snorql (added)
WebContent/snorql/index.html (added)
WebContent/snorql/link.png (added)
WebContent/snorql/prototype.js (added)
WebContent/snorql/rdf_flyer.24.gif (added)
WebContent/snorql/scriptaculous (added)
WebContent/snorql/scriptaculous/builder.js (added)
WebContent/snorql/scriptaculous/controls.js (added)
WebContent/snorql/scriptaculous/dragdrop.js (added)
WebContent/snorql/scriptaculous/effects.js (added)
WebContent/snorql/scriptaculous/scriptaculous.js (added)
WebContent/snorql/scriptaculous/slider.js (added)
WebContent/snorql/scriptaculous/sound.js (added)
WebContent/snorql/scriptaculous/unittest.js (added)
WebContent/snorql/snorql.js (added)
WebContent/snorql/sparql.js (added)
WebContent/snorql/style.css (added)
WebContent/snorql/xml-to-html.xsl (added)
WebContent/test.html (added)
WebContent/test.json (added)
WebContent/testTextArea.html (added)
auth_db.xml (added)
auth_ui.xml (added)
build (added)
build.xml (added)
build/classes (added)
build/classes/META-INF (added)
build/classes/META-INF/persistence.xml (added)
build/classes/MolgenisExtractModel.class (added)
build/classes/MolgenisGenerate.class (added)
build/classes/MolgenisUpdateDatabase.class (added)
build/classes/README.txt (added)
build/classes/alter_tables.sql (added)
build/classes/app (added)
build/classes/app/CsvExport.class (added)
build/classes/app/CsvImport$IntegerWrapper.class (added)
build/classes/app/CsvImport.class (added)
build/classes/app/CsvImportById.class (added)
build/classes/app/ExcelExport$1.class (added)
build/classes/app/ExcelExport.class (added)
build/classes/app/ExcelImport.class (added)
build/classes/app/ImportWizardExcelPrognosis.class (added)
build/classes/app/InMemoryDatabase.class (added)
build/classes/app/JDBCDatabase.class (added)
build/classes/app/JDBCMetaDatabase.class (added)
build/classes/app/servlet (added)
build/classes/app/servlet/ContextListener.class (added)
build/classes/app/servlet/MolgenisServlet.class (added)
build/classes/app/servlet/RestApi.class (added)
build/classes/app/servlet/SoapApi.class (added)
build/classes/app/servlet/source.R (added)
build/classes/app/ui (added)
build/classes/app/ui/EntitiesForm.class (added)
build/classes/app/ui/MainMenu.class (added)
build/classes/app/ui/Molgenis_authPlugin.class (added)
build/classes/app/ui/Molgenis_headerPlugin.class (added)
build/classes/app/ui/UserGroupsForm.class (added)
build/classes/app/ui/UsersForm.class (added)
build/classes/auth (added)
build/classes/auth/MolgenisEntity.class (added)
build/classes/auth/MolgenisUser.class (added)
build/classes/auth/MolgenisUserGroup.class (added)
build/classes/auth/MolgenisUserGroup_allowedToEdit.class (added)
build/classes/auth/MolgenisUserGroup_allowedToView.class (added)
build/classes/auth/MolgenisUserGroup_members.class (added)
build/classes/auth/R (added)
build/classes/auth/R/MolgenisEntity.R (added)
build/classes/auth/R/MolgenisUser.R (added)
build/classes/auth/R/MolgenisUserGroup.R (added)
build/classes/auth/R/MolgenisUserGroup_allowedToEdit.R (added)
build/classes/auth/R/MolgenisUserGroup_allowedToView.R (added)
build/classes/auth/R/MolgenisUserGroup_members.R (added)
build/classes/auth/csv (added)
build/classes/auth/csv/MolgenisEntityCsvReader$1.class (added)
build/classes/auth/csv/MolgenisEntityCsvReader.class (added)
build/classes/auth/csv/MolgenisUserCsvReader$1.class (added)
build/classes/auth/csv/MolgenisUserCsvReader.class (added)
build/classes/auth/csv/MolgenisUserGroupCsvReader$1.class (added)
build/classes/auth/csv/MolgenisUserGroupCsvReader.class (added)
build/classes/auth/csv/MolgenisUserGroup_allowedToEditCsvReader$1.class (added)
build/classes/auth/csv/MolgenisUserGroup_allowedToEditCsvReader.class (added)
build/classes/auth/csv/MolgenisUserGroup_allowedToViewCsvReader$1.class (added)
build/classes/auth/csv/MolgenisUserGroup_allowedToViewCsvReader.class (added)
build/classes/auth/csv/MolgenisUserGroup_membersCsvReader$1.class (added)
build/classes/auth/csv/MolgenisUserGroup_membersCsvReader.class (added)
build/classes/auth/db (added)
build/classes/auth/db/MolgenisEntityMapper.class (added)
build/classes/auth/db/MolgenisUserGroupMapper.class (added)
build/classes/auth/db/MolgenisUserGroup_allowedToEditMapper.class (added)
build/classes/auth/db/MolgenisUserGroup_allowedToViewMapper.class (added)
build/classes/auth/db/MolgenisUserGroup_membersMapper.class (added)
build/classes/auth/db/MolgenisUserMapper.class (added)
build/classes/auth/excel (added)
build/classes/auth/excel/MolgenisEntityExcelReader.class (added)
build/classes/auth/excel/MolgenisUserExcelReader.class (added)
build/classes/auth/excel/MolgenisUserGroupExcelReader.class (added)
build/classes/auth/excel/MolgenisUserGroup_allowedToEditExcelReader.class (added)
build/classes/auth/excel/MolgenisUserGroup_allowedToViewExcelReader.class (added)
build/classes/auth/excel/MolgenisUserGroup_membersExcelReader.class (added)
build/classes/commands (added)
build/classes/commands/MyCommand.class (added)
build/classes/commands/PubmedInput.class (added)
build/classes/commands/TestMrefChangeCommand.class (added)
build/classes/commands/TestXrefChangeCommand.class (added)
build/classes/count_per_entity.sql (added)
build/classes/count_per_table.sql (added)
build/classes/create_tables.sql (added)
build/classes/insert_metadata.sql (added)
build/classes/log4j.properties (added)
build/classes/org (added)
build/classes/org/eclipse (added)
build/classes/plugin (added)
build/classes/plugin/auth (added)
build/classes/plugin/auth/DatabaseLogin$Permission.class (added)
build/classes/plugin/auth/DatabaseLogin.class (added)
build/classes/plugin/auth/UserLogin.class (added)
build/classes/plugin/auth/UserLogin.ftl (added)
build/classes/plugin/examples (added)
build/classes/plugin/query (added)
build/classes/plugins (added)
build/classes/plugins/header (added)
build/classes/plugins/header/MolgenisHeader.class (added)
build/classes/plugins/header/MolgenisHeader.ftl (added)
build/classes/test (added)
build/classes/test/TestCsv.class (added)
build/classes/test/TestDataSet.class (added)
build/classes/test/TestDatabase.class (added)
build/classes/testng.xml (added)
data (added)
data/data.txt (added)
data/experiment.txt (added)
data/sample.txt (added)
data/trait.txt (added)
examples (added)
examples/examples (added)
examples/examples/dbquery (added)
examples/examples/dbquery/ExperimentQueryModel.java (added)
examples/examples/dbquery/ExperimentQueryPlugin.ftl (added)
examples/examples/dbquery/ExperimentQueryPlugin.java (added)
examples/examples/file (added)
examples/examples/file/FileServingPlugin.ftl (added)
examples/examples/file/FileServingPlugin.java (added)
examples/examples/helloworld (added)
examples/examples/helloworld/HelloWorldModel.java (added)
examples/examples/helloworld/HelloWorldPlugin.ftl (added)
examples/examples/helloworld/HelloWorldPlugin.java (added)
examples/examples/portal (added)
examples/examples/portal/PortalIntegrationPlugin.ftl (added)
examples/examples/portal/PortalIntegrationPlugin.java (added)
examples/examples/switchmacro (added)
examples/examples/switchmacro/SwitchPlugin.ftl (added)
examples/examples/switchmacro/SwitchPlugin.java (added)
examples/examples/wizard (added)
examples/examples/wizard/WizardPlugin.ftl (added)
examples/examples/wizard/WizardPlugin.java (added)
examples/login (added)
examples/login/DatabaseLogin.java (added)
examples/query (added)
examples/query/meta (added)
examples/query/meta/EntityMetaData.java (added)
examples/query/meta/FieldMetaData.java (added)
examples/query/meta/MetaDataException.java (added)
examples/query/meta/MolgenisMetaData.java (added)
examples/query/view (added)
examples/query/view/MartView.ftl (added)
examples/query/view/MartView.java (added)
examples/query/view/test.html (added)
examples/test (added)
examples/test/QueryRuleUtilTest.java (added)
examples/test/StaticMethods.java (added)
generated (added)
generated/java (added)
generated/java/app (added)
generated/java/app/CsvExport.java (added)
generated/java/app/CsvImport.java (added)
generated/java/app/CsvImportById.java (added)
generated/java/app/ExcelExport.java (added)
generated/java/app/ExcelImport.java (added)
generated/java/app/ImportWizardExcelPrognosis.java (added)
generated/java/app/InMemoryDatabase.java (added)
generated/java/app/JDBCDatabase.java (added)
generated/java/app/JDBCMetaDatabase.java (added)
generated/java/app/servlet (added)
generated/java/app/servlet/ContextListener.java (added)
generated/java/app/servlet/MolgenisServlet.java (added)
generated/java/app/servlet/RestApi.java (added)
generated/java/app/servlet/SoapApi.java (added)
generated/java/app/servlet/source.R (added)
generated/java/app/ui (added)
generated/java/app/ui/EntitiesForm.java (added)
generated/java/app/ui/MainMenu.java (added)
generated/java/app/ui/Molgenis_authPlugin.java (added)
generated/java/app/ui/Molgenis_headerPlugin.java (added)
generated/java/app/ui/UserGroupsForm.java (added)
generated/java/app/ui/UsersForm.java (added)
generated/java/auth (added)
generated/java/auth/MolgenisEntity.java (added)
generated/java/auth/MolgenisUser.java (added)
generated/java/auth/MolgenisUserGroup.java (added)
generated/java/auth/MolgenisUserGroup_allowedToEdit.java (added)
generated/java/auth/MolgenisUserGroup_allowedToView.java (added)
generated/java/auth/MolgenisUserGroup_members.java (added)
generated/java/auth/R (added)
generated/java/auth/R/MolgenisEntity.R (added)
generated/java/auth/R/MolgenisUser.R (added)
generated/java/auth/R/MolgenisUserGroup.R (added)
generated/java/auth/R/MolgenisUserGroup_allowedToEdit.R (added)
generated/java/auth/R/MolgenisUserGroup_allowedToView.R (added)
generated/java/auth/R/MolgenisUserGroup_members.R (added)
generated/java/auth/csv (added)
generated/java/auth/csv/MolgenisEntityCsvReader.java (added)
generated/java/auth/csv/MolgenisUserCsvReader.java (added)
generated/java/auth/csv/MolgenisUserGroupCsvReader.java (added)
generated/java/auth/csv/MolgenisUserGroup_allowedToEditCsvReader.java (added)
generated/java/auth/csv/MolgenisUserGroup_allowedToViewCsvReader.java (added)
generated/java/auth/csv/MolgenisUserGroup_membersCsvReader.java (added)
generated/java/auth/db (added)
generated/java/auth/db/MolgenisEntityMapper.java (added)
generated/java/auth/db/MolgenisUserGroupMapper.java (added)
generated/java/auth/db/MolgenisUserGroup_allowedToEditMapper.java (added)
generated/java/auth/db/MolgenisUserGroup_allowedToViewMapper.java (added)
generated/java/auth/db/MolgenisUserGroup_membersMapper.java (added)
generated/java/auth/db/MolgenisUserMapper.java (added)
generated/java/auth/excel (added)
generated/java/auth/excel/MolgenisEntityExcelReader.java (added)
generated/java/auth/excel/MolgenisUserExcelReader.java (added)
generated/java/auth/excel/MolgenisUserGroupExcelReader.java (added)
generated/java/auth/excel/MolgenisUserGroup_allowedToEditExcelReader.java (added)
generated/java/auth/excel/MolgenisUserGroup_allowedToViewExcelReader.java (added)
generated/java/auth/excel/MolgenisUserGroup_membersExcelReader.java (added)
generated/java/test (added)
generated/java/test/TestCsv.java (added)
generated/java/test/TestDataSet.java (added)
generated/java/test/TestDatabase.java (added)
generated/python (added)
generated/python/auth (added)
generated/python/auth/MolgenisEntity.py (added)
generated/python/auth/MolgenisUser.py (added)
generated/python/auth/MolgenisUserGroup.py (added)
generated/python/auth/MolgenisUserGroup_allowedToEdit.py (added)
generated/python/auth/MolgenisUserGroup_allowedToView.py (added)
generated/python/auth/MolgenisUserGroup_members.py (added)
generated/sql (added)
generated/sql/alter_tables.sql (added)
generated/sql/count_per_entity.sql (added)
generated/sql/count_per_table.sql (added)
generated/sql/create_tables.sql (added)
generated/sql/insert_metadata.sql (added)
handwritten (added)
handwritten/java (added)
handwritten/java/META-INF (added)
handwritten/java/META-INF/persistence.xml (added)
handwritten/java/MolgenisExtractModel.java (added)
handwritten/java/MolgenisGenerate.java (added)
handwritten/java/MolgenisUpdateDatabase.java (added)
handwritten/java/README.txt (added)
handwritten/java/commands (added)
handwritten/java/commands/MyCommand.java (added)
handwritten/java/commands/PubmedInput.java (added)
handwritten/java/commands/TestMrefChangeCommand.java (added)
handwritten/java/commands/TestXrefChangeCommand.java (added)
handwritten/java/log4j.properties (added)
handwritten/java/org (added)
handwritten/java/org/eclipse (added)
handwritten/java/plugin (added)
handwritten/java/plugin/auth (added)
handwritten/java/plugin/auth/DatabaseLogin.java (added)
handwritten/java/plugin/auth/UserLogin.ftl (added)
handwritten/java/plugin/auth/UserLogin.java (added)
handwritten/java/plugin/examples (added)
handwritten/java/plugin/query (added)
handwritten/java/plugins (added)
handwritten/java/plugins/header (added)
handwritten/java/plugins/header/MolgenisHeader.ftl (added)
handwritten/java/plugins/header/MolgenisHeader.java (added)
handwritten/java/testng.xml (added)
molgenis.dtd (added)
molgenis.properties (added)
molgenis.test.properties (added)
molgenis.xsd (added)
molgenis_auth.xml (added)
pom.xml (added)

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Changeset 3438

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