Changeset 3448

Timestamp:

08/26/10 17:15:48 (18 months ago)

Author:

jvelde

Message:

 

Location:

molgenis_processing/molgenis_compute_joeri

Files:

• .classpath (added)
• .project (added)
• .settings (added)
• .settings/.jsdtscope (added)
• .settings/org.eclipse.jdt.core.prefs (added)
• .settings/org.eclipse.jst.common.project.facet.core.prefs (added)
• .settings/org.eclipse.wst.common.component (added)
• .settings/org.eclipse.wst.common.project.facet.core.xml (added)
• .settings/org.eclipse.wst.jsdt.ui.superType.container (added)
• .settings/org.eclipse.wst.jsdt.ui.superType.name (added)
• WebContent/META-INF (added)
• WebContent/META-INF/MANIFEST.MF (added)
• WebContent/META-INF/context.xml (added)
• WebContent/MydasServerConfig.xml (added)
• WebContent/TEST.style (added)
• WebContent/WEB-INF/classes (modified) (1 prop)
• WebContent/WEB-INF/lib (added)
• WebContent/WEB-INF/lib/axis-ant.jar (added)
• WebContent/WEB-INF/lib/axis.jar (added)
• WebContent/WEB-INF/lib/commons-discovery-0.2.jar (added)
• WebContent/WEB-INF/lib/commons-math-1.2.jar (added)
• WebContent/WEB-INF/lib/j2ssh-core-0.2.9.jar (added)
• WebContent/WEB-INF/lib/jaxrpc.jar (added)
• WebContent/WEB-INF/lib/jcommon-1.0.16.jar (added)
• WebContent/WEB-INF/lib/jfreechart-1.0.13.jar (added)
• WebContent/WEB-INF/lib/keggapi.jar (added)
• WebContent/WEB-INF/lib/limpopo-1.0-alpha-18092009.jar (added)
• WebContent/WEB-INF/lib/mindterm.jar (added)
• WebContent/WEB-INF/lib/mydas-1.6.0.jar (added)
• WebContent/WEB-INF/lib/ols-client.jar (added)
• WebContent/WEB-INF/lib/ontoCAT_v0.8.jar (added)
• WebContent/WEB-INF/lib/oscache-2.4.jar (added)
• WebContent/WEB-INF/lib/sam-1.16.jar (added)
• WebContent/WEB-INF/lib/sshfactory.jar (added)
• WebContent/WEB-INF/lib/xpp3-1.1.3.4.C.jar (added)
• WebContent/WEB-INF/web.xml (added)
• WebContent/about.html (added)
• WebContent/doc (added)
• WebContent/doc/entitymodel.html (added)
• WebContent/doc/fileformat.html (added)
• WebContent/doc/objectmodel-uml-diagram-fuge.bio.dot (added)
• WebContent/doc/objectmodel-uml-diagram-fuge.bio.dot.png (added)
• WebContent/doc/objectmodel-uml-diagram-fuge.bio.dot.svg (added)
• WebContent/doc/objectmodel-uml-diagram-fuge.common.dot (added)
• WebContent/doc/objectmodel-uml-diagram-fuge.common.dot.png (added)
• WebContent/doc/objectmodel-uml-diagram-fuge.common.dot.svg (added)
• WebContent/doc/objectmodel-uml-diagram-molgenis.compute.dot (added)
• WebContent/doc/objectmodel-uml-diagram-molgenis.compute.dot.png (added)
• WebContent/doc/objectmodel-uml-diagram-molgenis.compute.dot.svg (added)
• WebContent/doc/objectmodel-uml-diagram-summary-fuge.bio.dot (added)
• WebContent/doc/objectmodel-uml-diagram-summary-fuge.bio.dot.png (added)
• WebContent/doc/objectmodel-uml-diagram-summary-fuge.common.dot (added)
• WebContent/doc/objectmodel-uml-diagram-summary-fuge.common.dot.png (added)
• WebContent/doc/objectmodel-uml-diagram-summary-molgenis.compute.dot (added)
• WebContent/doc/objectmodel-uml-diagram-summary-molgenis.compute.dot.png (added)
• WebContent/doc/objectmodel-uml-diagram-summary-xgap.core.dot (added)
• WebContent/doc/objectmodel-uml-diagram-summary-xgap.core.dot.png (added)
• WebContent/doc/objectmodel-uml-diagram-summary-xgap.subject.dot (added)
• WebContent/doc/objectmodel-uml-diagram-summary-xgap.subject.dot.png (added)
• WebContent/doc/objectmodel-uml-diagram-summary-xgap.trait.dot (added)
• WebContent/doc/objectmodel-uml-diagram-summary-xgap.trait.dot.png (added)
• WebContent/doc/objectmodel-uml-diagram-summary-xgap_module.cluster.dot (added)
• WebContent/doc/objectmodel-uml-diagram-summary.dot (added)
• WebContent/doc/objectmodel-uml-diagram-summary.dot.png (added)
• WebContent/doc/objectmodel-uml-diagram-xgap.core.dot (added)
• WebContent/doc/objectmodel-uml-diagram-xgap.core.dot.png (added)
• WebContent/doc/objectmodel-uml-diagram-xgap.core.dot.svg (added)
• WebContent/doc/objectmodel-uml-diagram-xgap.subject.dot (added)
• WebContent/doc/objectmodel-uml-diagram-xgap.subject.dot.png (added)
• WebContent/doc/objectmodel-uml-diagram-xgap.subject.dot.svg (added)
• WebContent/doc/objectmodel-uml-diagram-xgap.trait.dot (added)
• WebContent/doc/objectmodel-uml-diagram-xgap.trait.dot.png (added)
• WebContent/doc/objectmodel-uml-diagram-xgap.trait.dot.svg (added)
• WebContent/doc/objectmodel-uml-diagram-xgap_module.cluster.dot (added)
• WebContent/doc/objectmodel-uml-diagram.dot (added)
• WebContent/doc/objectmodel-uml-diagram.dot.png (added)
• WebContent/doc/objectmodel-uml-diagram.dot.svg (added)
• WebContent/doc/objectmodel.html (added)
• WebContent/doc/tabledoc.html (added)
• WebContent/doc/textUML.txt (added)
• WebContent/download (added)
• WebContent/generated-res (modified) (1 prop)
• WebContent/index.html (added)
• WebContent/res (added)
• WebContent/res/css (added)
• WebContent/res/css/bluecurve (added)
• WebContent/res/css/bluecurve/bluecurve.css (added)
• WebContent/res/css/bluecurve/handle.horizontal.png (added)
• WebContent/res/css/bluecurve/handle.vertical.png (added)
• WebContent/res/css/bluecurve/horizontal.gif (added)
• WebContent/res/css/bluecurve/vertical.gif (added)
• WebContent/res/css/colors.css (added)
• WebContent/res/css/colors_blue.css (added)
• WebContent/res/css/colors_blue2.css (added)
• WebContent/res/css/colors_grey.css (added)
• WebContent/res/css/colors_maroon.css (added)
• WebContent/res/css/colors_old.css (added)
• WebContent/res/css/colors_red.css (added)
• WebContent/res/css/data.css (added)
• WebContent/res/css/dateinput.css (added)
• WebContent/res/css/dateipnut.css (added)
• WebContent/res/css/main.css (added)
• WebContent/res/css/menu.css (added)
• WebContent/res/css/xrefinput.css (added)
• WebContent/res/css_backup (added)
• WebContent/res/css_backup/data.css (added)
• WebContent/res/css_backup/dateinput.css (added)
• WebContent/res/css_backup/dateipnut.css (added)
• WebContent/res/css_backup/main.css (added)
• WebContent/res/css_backup/menu.css (added)
• WebContent/res/images_in_this_dir_TMP.zip (added)
• WebContent/res/img (added)
• WebContent/res/img/_logo_molgenis.gif (added)
• WebContent/res/img/_logo_molgenis_old.gif (added)
• WebContent/res/img/cancel.png (added)
• WebContent/res/img/close.png (added)
• WebContent/res/img/delete.png (added)
• WebContent/res/img/deselect.png (added)
• WebContent/res/img/deselectall.png (added)
• WebContent/res/img/down.png (added)
• WebContent/res/img/download.png (added)
• WebContent/res/img/editview.gif (added)
• WebContent/res/img/exit.bmp (added)
• WebContent/res/img/filter.png (added)
• WebContent/res/img/first.png (added)
• WebContent/res/img/help.jpeg (added)
• WebContent/res/img/info.png (added)
• WebContent/res/img/last.png (added)
• WebContent/res/img/limit.png (added)
• WebContent/res/img/listview.png (added)
• WebContent/res/img/loading.gif (added)
• WebContent/res/img/logo_molgenis.gif (added)
• WebContent/res/img/new.png (added)
• WebContent/res/img/next.png (added)
• WebContent/res/img/none.png (added)
• WebContent/res/img/open.png (added)
• WebContent/res/img/prev.png (added)
• WebContent/res/img/pulldown.gif (added)
• WebContent/res/img/recordview.png (added)
• WebContent/res/img/reset.png (added)
• WebContent/res/img/rowStart.png (added)
• WebContent/res/img/rowStop.png (added)
• WebContent/res/img/save.png (added)
• WebContent/res/img/select.png (added)
• WebContent/res/img/sort_asc.gif (added)
• WebContent/res/img/sort_desc.gif (added)
• WebContent/res/img/txt.gif (added)
• WebContent/res/img/up.png (added)
• WebContent/res/img/update.gif (added)
• WebContent/res/img/upload.png (added)
• WebContent/res/scripts (added)
• WebContent/res/scripts/all.js (added)
• WebContent/res/scripts/dateinput.js (added)
• WebContent/res/scripts/datetimeinput.js (added)
• WebContent/res/scripts/menu.js (added)
• WebContent/res/scripts/mrefinput.js (added)
• WebContent/res/scripts/overlib.js (added)
• WebContent/res/scripts/popup.js (added)
• WebContent/res/scripts/range.js (added)
• WebContent/res/scripts/rest.js (added)
• WebContent/res/scripts/slider.js (added)
• WebContent/res/scripts/textinput.js (added)
• WebContent/res/scripts/timer.js (added)
• WebContent/res/scripts/xrefinput.js (added)
• WebContent/test.jsp (added)
• WebContent/xref.html (added)
• build (modified) (1 prop)
• build.xml (added)
• generated (modified) (1 prop)
• handwritten/Cluster_readme.txt (added)
• handwritten/Deploy_readme.txt (added)
• handwritten/Install_readme.txt (added)
• handwritten/Readme.txt (added)
• handwritten/java (added)
• handwritten/java/MolgenisGenerate.java (added)
• handwritten/java/MolgenisUpdateDatabase.java (added)
• handwritten/java/MolgenisUpdateTestDatabase.java (added)
• handwritten/java/RApiServlet.java (added)
• handwritten/java/XrefServlet.java (added)
• handwritten/java/decorators (added)
• handwritten/java/decorators/DataDecorator.java (added)
• handwritten/java/decorators/Deleters.java (added)
• handwritten/java/decorators/IdentifiableDecorator.java (added)
• handwritten/java/decorators/NameConvention.java (added)
• handwritten/java/decorators/NameConventionWrappers.java (added)
• handwritten/java/log4j.properties (added)
• handwritten/java/miscellaneous (added)
• handwritten/java/miscellaneous/convertors (added)
• handwritten/java/miscellaneous/convertors/ChopFile.java (added)
• handwritten/java/miscellaneous/dbhelp (added)
• handwritten/java/miscellaneous/dbhelp/TableUtil.java (added)
• handwritten/java/plugins (added)
• handwritten/java/plugins/cluster (added)
• handwritten/java/plugins/cluster/ClusterPlugin.ftl (added)
• handwritten/java/plugins/cluster/ClusterPlugin.java (added)
• handwritten/java/plugins/cluster/ClusterPluginModel.java (added)
• handwritten/java/plugins/cluster/R (added)
• handwritten/java/plugins/cluster/R/ClusterJobs_0.1.tar.gz (added)
• handwritten/java/plugins/cluster/TaskReporter.java (added)
• handwritten/java/plugins/cluster/helper (added)
• handwritten/java/plugins/cluster/helper/Command.java (added)
• handwritten/java/plugins/cluster/helper/HelperFunctions.java (added)
• handwritten/java/plugins/cluster/helper/LoginSettings.java (added)
• handwritten/java/plugins/cluster/implementations (added)
• handwritten/java/plugins/cluster/implementations/ClusterComputationResource.java (added)
• handwritten/java/plugins/cluster/implementations/DatabaseJob.java (added)
• handwritten/java/plugins/cluster/implementations/DatabaseJobManager.java (added)
• handwritten/java/plugins/cluster/interfaces (added)
• handwritten/java/plugins/cluster/interfaces/ComputationResource.java (added)
• handwritten/java/plugins/cluster/interfaces/Job.java (added)
• handwritten/java/plugins/cluster/interfaces/JobManager.java (added)
• handwritten/java/plugins/cluster/ssh (added)
• handwritten/java/plugins/cluster/ssh/BasicClient.java (added)
• handwritten/java/plugins/cluster/ssh/SshTools.java (added)
• handwritten/java/plugins/header (added)
• handwritten/java/plugins/header/MolgenisHeader.ftl (added)
• handwritten/java/plugins/header/MolgenisHeader.java (added)
• handwritten/java/plugins/tool (added)
• handwritten/java/plugins/tool/MyComputeJob.java (added)
• handwritten/java/plugins/tool/SimpleComputeManager.java (added)
• handwritten/java/plugins/tool/ToolRunner.ftl (added)
• handwritten/java/plugins/tool/ToolRunner.java (added)
• handwritten/java/plugins/tool/computeframework (added)
• handwritten/java/plugins/tool/computeframework/ComputeException.java (added)
• handwritten/java/plugins/tool/computeframework/ComputeJob.java (added)
• handwritten/java/plugins/tool/computeframework/ComputeJobImp.java (added)
• handwritten/java/plugins/tool/computeframework/ComputeManager.java (added)
• handwritten/java/plugins/tool/computeframework/ComputeObserver.java (added)
• handwritten/java/plugins/tool/computeframework/ComputeState.java (added)
• handwritten/java/plugins/tool/computeframework/ResultData.java (added)
• handwritten/java/plugins/topmenu (added)
• handwritten/java/plugins/topmenu/ApiScreen.ftl (added)
• handwritten/java/plugins/topmenu/ApiScreen.java (added)
• handwritten/java/plugins/topmenu/DocumentationScreen.ftl (added)
• handwritten/java/plugins/topmenu/DocumentationScreen.java (added)
• handwritten/java/regressiontest (added)
• handwritten/java/regressiontest/cluster (added)
• handwritten/java/regressiontest/cluster/AddClusterMetaModelAndExampleData.java (added)
• handwritten/java/regressiontest/cluster/FillClusterMetaModel.java (added)
• handwritten/java/regressiontest/misc (added)
• handwritten/java/regressiontest/misc/TestNameConvention.java (added)
• handwritten/java/regressiontest/util (added)
• handwritten/java/regressiontest/util/Util.java (added)
• handwritten/java/testng.xml (added)
• handwritten/xml (added)
• handwritten/xml/xgap_module_cluster.xml (added)
• handwritten/xml/xgap_ui.xml (added)
• molgenis.properties (added)
• molgenis.test.properties (added)
• test-output (added)