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Changeset 3456

Timestamp:

09/02/10 17:12:26 (17 months ago)

Author:

a.kanterakis

Message:

add support for some extreme MAGE-TAB cases

Location:

molgenis_projects/magetab

Files:

: 3 added
: 42 deleted
: 467 edited

.project (modified) (view diffs)
WebContent/META-INF/context.xml (modified) (view diffs)
WebContent/WEB-INF/molgenis-rdf-mapping.n3 (modified) (view diffs)
WebContent/generated-doc/entitymodel.html (modified) (view diffs)
WebContent/generated-doc/fileformat.html (modified) (view diffs)
WebContent/generated-doc/objectmodel.html (modified) (view diffs)
WebContent/generated-doc/tabledoc.html (modified) (view diffs)
WebContent/generated-doc/textUML.txt (modified) (view diffs)
build/classes/GeneratorServlet$1.class (deleted)
data/E-AFMX-1.idf.txtDIR/ArrayDesign.txt (deleted)
data/E-AFMX-1.idf.txtDIR/Assay.txt (deleted)
data/E-AFMX-1.idf.txtDIR/Characteristic.txt (deleted)
data/E-AFMX-1.idf.txtDIR/CompositeElement.txt (deleted)
data/E-AFMX-1.idf.txtDIR/Contact.txt (deleted)
data/E-AFMX-1.idf.txtDIR/Extract.txt (deleted)
data/E-AFMX-1.idf.txtDIR/Factor.txt (deleted)
data/E-AFMX-1.idf.txtDIR/FactorValue.txt (deleted)
data/E-AFMX-1.idf.txtDIR/Investigation.txt (deleted)
data/E-AFMX-1.idf.txtDIR/LabeledExtract.txt (deleted)
data/E-AFMX-1.idf.txtDIR/Measurement.txt (deleted)
data/E-AFMX-1.idf.txtDIR/NameValueType.txt (deleted)
data/E-AFMX-1.idf.txtDIR/OntologySource.txt (deleted)
data/E-AFMX-1.idf.txtDIR/OntologyTerm.txt (deleted)
data/E-AFMX-1.idf.txtDIR/Person.txt (deleted)
data/E-AFMX-1.idf.txtDIR/Protocol.txt (deleted)
data/E-AFMX-1.idf.txtDIR/ProtocolApplication.txt (deleted)
data/E-AFMX-1.idf.txtDIR/ProtocolParameter.txt (deleted)
data/E-AFMX-1.idf.txtDIR/Publication.txt (deleted)
data/E-AFMX-1.idf.txtDIR/Scan.txt (deleted)
data/E-AFMX-1.idf.txtDIR/Source.txt (deleted)
data/E-AFMX-10.idf.txtDIR/ArrayDesign.txt (deleted)
data/E-AFMX-10.idf.txtDIR/Assay.txt (deleted)
data/E-AFMX-10.idf.txtDIR/Characteristic.txt (deleted)
data/E-AFMX-10.idf.txtDIR/CompositeElement.txt (deleted)
data/E-AFMX-10.idf.txtDIR/Contact.txt (deleted)
data/E-AFMX-10.idf.txtDIR/Extract.txt (deleted)
data/E-AFMX-10.idf.txtDIR/Factor.txt (deleted)
data/E-AFMX-10.idf.txtDIR/FactorValue.txt (deleted)
data/E-AFMX-10.idf.txtDIR/Investigation.txt (deleted)
data/E-AFMX-10.idf.txtDIR/LabeledExtract.txt (deleted)
data/E-AFMX-10.idf.txtDIR/Measurement.txt (deleted)
data/E-AFMX-10.idf.txtDIR/NameValueType.txt (deleted)
data/E-AFMX-10.idf.txtDIR/OntologySource.txt (deleted)
data/E-AFMX-10.idf.txtDIR/OntologyTerm.txt (deleted)
data/E-AFMX-10.idf.txtDIR/Person.txt (deleted)
data/E-AFMX-10.idf.txtDIR/Protocol.txt (deleted)
data/E-AFMX-10.idf.txtDIR/ProtocolApplication.txt (deleted)
data/E-AFMX-10.idf.txtDIR/Publication.txt (deleted)
data/E-AFMX-10.idf.txtDIR/Scan.txt (deleted)
data/E-AFMX-10.idf.txtDIR/Source.txt (deleted)
generated/java/app/CsvExport.java (modified) (view diffs)
generated/java/app/CsvImport.java (modified) (view diffs)
generated/java/app/CsvImportById.java (modified) (view diffs)
generated/java/app/ExcelExport.java (modified) (view diffs)
generated/java/app/ExcelImport.java (modified) (view diffs)
generated/java/app/ImportWizardExcelPrognosis.java (modified) (view diffs)
generated/java/app/InMemoryDatabase.java (modified) (view diffs)
generated/java/app/JDBCDatabase.java (modified) (view diffs)
generated/java/app/JDBCMetaDatabase.java (modified) (view diffs)
generated/java/app/servlet/MolgenisServlet.java (modified) (view diffs)
generated/java/app/servlet/SoapApi.java (modified) (view diffs)
generated/java/app/servlet/source.R (modified) (view diffs)
generated/java/app/ui/ADFMenu.java (modified) (view diffs)
generated/java/app/ui/ADFmenuMenu.java (modified) (view diffs)
generated/java/app/ui/ArrayDesignForm.java (modified) (view diffs)
generated/java/app/ui/CommentsForm.java (modified) (view diffs)
generated/java/app/ui/ExpermentalFactorsForm.java (modified) (view diffs)
generated/java/app/ui/IDFMenu.java (modified) (view diffs)
generated/java/app/ui/Investigations2Form.java (modified) (view diffs)
generated/java/app/ui/Investigations3Form.java (modified) (view diffs)
generated/java/app/ui/InvestigationsForm.java (modified) (view diffs)
generated/java/app/ui/MainMenu.java (modified) (view diffs)
generated/java/app/ui/MaterialsForm.java (modified) (view diffs)
generated/java/app/ui/Molgenis_headerPlugin.java (modified) (view diffs)
generated/java/app/ui/Name234Plugin.java (modified) (view diffs)
generated/java/app/ui/OntologySourcesForm.java (modified) (view diffs)
generated/java/app/ui/OntologyTermsForm.java (modified) (view diffs)
generated/java/app/ui/PersonsForm.java (modified) (view diffs)
generated/java/app/ui/ProtocolsForm.java (modified) (view diffs)
generated/java/app/ui/PublicationsForm.java (modified) (view diffs)
generated/java/app/ui/SDRFMenu.java (modified) (view diffs)
generated/java/app/ui/SDRFmenuMenu.java (modified) (view diffs)
generated/java/app/ui/TermsForm.java (modified) (view diffs)
generated/java/magetab/adf/ArrayDesign.java (modified) (view diffs)
generated/java/magetab/adf/CompositeElement.java (modified) (view diffs)
generated/java/magetab/adf/CompositeElement_Comments.java (modified) (view diffs)
generated/java/magetab/adf/CompositeElement_DatabaseEntry.java (modified) (view diffs)
generated/java/magetab/adf/CompositeElement_Reporters.java (modified) (view diffs)
generated/java/magetab/adf/DesignElement.java (modified) (view diffs)
generated/java/magetab/adf/Feature.java (modified) (view diffs)
generated/java/magetab/adf/R/ArrayDesign.R (modified) (view diffs)
generated/java/magetab/adf/R/CompositeElement.R (modified) (view diffs)
generated/java/magetab/adf/R/CompositeElement_Comments.R (modified) (view diffs)
generated/java/magetab/adf/R/CompositeElement_DatabaseEntry.R (modified) (view diffs)
generated/java/magetab/adf/R/CompositeElement_Reporters.R (modified) (view diffs)
generated/java/magetab/adf/R/DesignElement.R (modified) (view diffs)
generated/java/magetab/adf/R/Feature.R (modified) (view diffs)
generated/java/magetab/adf/R/Reporter.R (modified) (view diffs)
generated/java/magetab/adf/R/ReporterGroup.R (modified) (view diffs)
generated/java/magetab/adf/R/Reporter_ControlType.R (modified) (view diffs)
generated/java/magetab/adf/R/Reporter_DatabaseEntry.R (modified) (view diffs)
generated/java/magetab/adf/R/Reporter_reporterGroup.R (modified) (view diffs)
generated/java/magetab/adf/Reporter.java (modified) (view diffs)
generated/java/magetab/adf/ReporterGroup.java (modified) (view diffs)
generated/java/magetab/adf/Reporter_ControlType.java (modified) (view diffs)
generated/java/magetab/adf/Reporter_DatabaseEntry.java (modified) (view diffs)
generated/java/magetab/adf/Reporter_reporterGroup.java (modified) (view diffs)
generated/java/magetab/adf/csv/ArrayDesignCsvReader.java (modified) (view diffs)
generated/java/magetab/adf/csv/CompositeElementCsvReader.java (modified) (view diffs)
generated/java/magetab/adf/csv/CompositeElement_CommentsCsvReader.java (modified) (view diffs)
generated/java/magetab/adf/csv/CompositeElement_DatabaseEntryCsvReader.java (modified) (view diffs)
generated/java/magetab/adf/csv/CompositeElement_ReportersCsvReader.java (modified) (view diffs)
generated/java/magetab/adf/csv/DesignElementCsvReader.java (modified) (view diffs)
generated/java/magetab/adf/csv/FeatureCsvReader.java (modified) (view diffs)
generated/java/magetab/adf/csv/ReporterCsvReader.java (modified) (view diffs)
generated/java/magetab/adf/csv/ReporterGroupCsvReader.java (modified) (view diffs)
generated/java/magetab/adf/csv/Reporter_ControlTypeCsvReader.java (modified) (view diffs)
generated/java/magetab/adf/csv/Reporter_DatabaseEntryCsvReader.java (modified) (view diffs)
generated/java/magetab/adf/csv/Reporter_reporterGroupCsvReader.java (modified) (view diffs)
generated/java/magetab/adf/db/ArrayDesignMapper.java (modified) (view diffs)
generated/java/magetab/adf/db/CompositeElementMapper.java (modified) (view diffs)
generated/java/magetab/adf/db/CompositeElement_CommentsMapper.java (modified) (view diffs)
generated/java/magetab/adf/db/CompositeElement_DatabaseEntryMapper.java (modified) (view diffs)
generated/java/magetab/adf/db/CompositeElement_ReportersMapper.java (modified) (view diffs)
generated/java/magetab/adf/db/DesignElementMapper.java (modified) (view diffs)
generated/java/magetab/adf/db/FeatureMapper.java (modified) (view diffs)
generated/java/magetab/adf/db/ReporterGroupMapper.java (modified) (view diffs)
generated/java/magetab/adf/db/ReporterMapper.java (modified) (view diffs)
generated/java/magetab/adf/db/Reporter_ControlTypeMapper.java (modified) (view diffs)
generated/java/magetab/adf/db/Reporter_DatabaseEntryMapper.java (modified) (view diffs)
generated/java/magetab/adf/db/Reporter_reporterGroupMapper.java (modified) (view diffs)
generated/java/magetab/adf/excel/ArrayDesignExcelReader.java (modified) (view diffs)
generated/java/magetab/adf/excel/CompositeElementExcelReader.java (modified) (view diffs)
generated/java/magetab/adf/excel/CompositeElement_CommentsExcelReader.java (modified) (view diffs)
generated/java/magetab/adf/excel/CompositeElement_DatabaseEntryExcelReader.java (modified) (view diffs)
generated/java/magetab/adf/excel/CompositeElement_ReportersExcelReader.java (modified) (view diffs)
generated/java/magetab/adf/excel/DesignElementExcelReader.java (modified) (view diffs)
generated/java/magetab/adf/excel/FeatureExcelReader.java (modified) (view diffs)
generated/java/magetab/adf/excel/ReporterExcelReader.java (modified) (view diffs)
generated/java/magetab/adf/excel/ReporterGroupExcelReader.java (modified) (view diffs)
generated/java/magetab/adf/excel/Reporter_ControlTypeExcelReader.java (modified) (view diffs)
generated/java/magetab/adf/excel/Reporter_DatabaseEntryExcelReader.java (modified) (view diffs)
generated/java/magetab/adf/excel/Reporter_reporterGroupExcelReader.java (modified) (view diffs)
generated/java/magetab/data/Data.java (modified) (view diffs)
generated/java/magetab/data/DataElement.java (modified) (view diffs)
generated/java/magetab/data/DataFile.java (modified) (view diffs)
generated/java/magetab/data/DataMatrix.java (modified) (view diffs)
generated/java/magetab/data/DimensionElement.java (modified) (view diffs)
generated/java/magetab/data/Image.java (modified) (view diffs)
generated/java/magetab/data/R/Data.R (modified) (view diffs)
generated/java/magetab/data/R/DataElement.R (modified) (view diffs)
generated/java/magetab/data/R/DataFile.R (modified) (view diffs)
generated/java/magetab/data/R/DataMatrix.R (modified) (view diffs)
generated/java/magetab/data/R/DimensionElement.R (modified) (view diffs)
generated/java/magetab/data/R/Image.R (modified) (view diffs)
generated/java/magetab/data/csv/DataCsvReader.java (modified) (view diffs)
generated/java/magetab/data/csv/DataElementCsvReader.java (modified) (view diffs)
generated/java/magetab/data/csv/DataFileCsvReader.java (modified) (view diffs)
generated/java/magetab/data/csv/DataMatrixCsvReader.java (modified) (view diffs)
generated/java/magetab/data/csv/DimensionElementCsvReader.java (modified) (view diffs)
generated/java/magetab/data/csv/ImageCsvReader.java (modified) (view diffs)
generated/java/magetab/data/db/DataElementMapper.java (modified) (view diffs)
generated/java/magetab/data/db/DataFileMapper.java (modified) (view diffs)
generated/java/magetab/data/db/DataMapper.java (modified) (view diffs)
generated/java/magetab/data/db/DataMatrixMapper.java (modified) (view diffs)
generated/java/magetab/data/db/DimensionElementMapper.java (modified) (view diffs)
generated/java/magetab/data/db/ImageMapper.java (modified) (view diffs)
generated/java/magetab/data/excel/DataElementExcelReader.java (modified) (view diffs)
generated/java/magetab/data/excel/DataExcelReader.java (modified) (view diffs)
generated/java/magetab/data/excel/DataFileExcelReader.java (modified) (view diffs)
generated/java/magetab/data/excel/DataMatrixExcelReader.java (modified) (view diffs)
generated/java/magetab/data/excel/DimensionElementExcelReader.java (modified) (view diffs)
generated/java/magetab/data/excel/ImageExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/Contact.java (modified) (view diffs)
generated/java/magetab/idf/Factor.java (modified) (view diffs)
generated/java/magetab/idf/Identifiable.java (modified) (view diffs)
generated/java/magetab/idf/Investigation.java (modified) (view diffs)
generated/java/magetab/idf/Investigation_ExperimentalDesigns.java (modified) (view diffs)
generated/java/magetab/idf/Investigation_Factors.java (modified) (view diffs)
generated/java/magetab/idf/Investigation_NormalizationTypes.java (modified) (view diffs)
generated/java/magetab/idf/Investigation_Persons.java (modified) (view diffs)
generated/java/magetab/idf/Investigation_Protocols.java (modified) (view diffs)
generated/java/magetab/idf/Investigation_Publications.java (modified) (view diffs)
generated/java/magetab/idf/Investigation_QualityControls.java (modified) (view diffs)
generated/java/magetab/idf/Investigation_ReplicateTypes.java (modified) (view diffs)
generated/java/magetab/idf/NameValueType.java (modified) (view diffs)
generated/java/magetab/idf/OntologySource.java (modified) (view diffs)
generated/java/magetab/idf/OntologyTerm.java (modified) (view diffs)
generated/java/magetab/idf/Person.java (modified) (view diffs)
generated/java/magetab/idf/Person_Roles.java (modified) (view diffs)
generated/java/magetab/idf/Protocol.java (modified) (view diffs)
generated/java/magetab/idf/ProtocolParameter.java (modified) (view diffs)
generated/java/magetab/idf/Publication.java (modified) (view diffs)
generated/java/magetab/idf/R/Contact.R (modified) (view diffs)
generated/java/magetab/idf/R/Factor.R (modified) (view diffs)
generated/java/magetab/idf/R/Identifiable.R (modified) (view diffs)
generated/java/magetab/idf/R/Investigation.R (modified) (view diffs)
generated/java/magetab/idf/R/Investigation_ExperimentalDesigns.R (modified) (view diffs)
generated/java/magetab/idf/R/Investigation_Factors.R (modified) (view diffs)
generated/java/magetab/idf/R/Investigation_NormalizationTypes.R (modified) (view diffs)
generated/java/magetab/idf/R/Investigation_Persons.R (modified) (view diffs)
generated/java/magetab/idf/R/Investigation_Protocols.R (modified) (view diffs)
generated/java/magetab/idf/R/Investigation_Publications.R (modified) (view diffs)
generated/java/magetab/idf/R/Investigation_QualityControls.R (modified) (view diffs)
generated/java/magetab/idf/R/Investigation_ReplicateTypes.R (modified) (view diffs)
generated/java/magetab/idf/R/NameValueType.R (modified) (view diffs)
generated/java/magetab/idf/R/OntologySource.R (modified) (view diffs)
generated/java/magetab/idf/R/OntologyTerm.R (modified) (view diffs)
generated/java/magetab/idf/R/Person.R (modified) (view diffs)
generated/java/magetab/idf/R/Person_Roles.R (modified) (view diffs)
generated/java/magetab/idf/R/Protocol.R (modified) (view diffs)
generated/java/magetab/idf/R/ProtocolParameter.R (modified) (view diffs)
generated/java/magetab/idf/R/Publication.R (modified) (view diffs)
generated/java/magetab/idf/csv/ContactCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/FactorCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/IdentifiableCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/InvestigationCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/Investigation_ExperimentalDesignsCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/Investigation_FactorsCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/Investigation_NormalizationTypesCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/Investigation_PersonsCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/Investigation_ProtocolsCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/Investigation_PublicationsCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/Investigation_QualityControlsCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/Investigation_ReplicateTypesCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/NameValueTypeCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/OntologySourceCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/OntologyTermCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/PersonCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/Person_RolesCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/ProtocolCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/ProtocolParameterCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/csv/PublicationCsvReader.java (modified) (view diffs)
generated/java/magetab/idf/db/ContactMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/FactorMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/IdentifiableMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/InvestigationMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/Investigation_ExperimentalDesignsMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/Investigation_FactorsMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/Investigation_NormalizationTypesMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/Investigation_PersonsMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/Investigation_ProtocolsMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/Investigation_PublicationsMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/Investigation_QualityControlsMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/Investigation_ReplicateTypesMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/NameValueTypeMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/OntologySourceMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/OntologyTermMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/PersonMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/Person_RolesMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/ProtocolMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/ProtocolParameterMapper.java (modified) (view diffs)
generated/java/magetab/idf/db/PublicationMapper.java (modified) (view diffs)
generated/java/magetab/idf/excel/ContactExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/FactorExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/IdentifiableExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/InvestigationExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/Investigation_ExperimentalDesignsExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/Investigation_FactorsExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/Investigation_NormalizationTypesExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/Investigation_PersonsExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/Investigation_ProtocolsExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/Investigation_PublicationsExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/Investigation_QualityControlsExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/Investigation_ReplicateTypesExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/NameValueTypeExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/OntologySourceExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/OntologyTermExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/PersonExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/Person_RolesExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/ProtocolExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/ProtocolParameterExcelReader.java (modified) (view diffs)
generated/java/magetab/idf/excel/PublicationExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/Assay.java (modified) (view diffs)
generated/java/magetab/sdrf/Assay_arrayDataFiles.java (modified) (view diffs)
generated/java/magetab/sdrf/Assay_arrayDataMatrixFiles.java (modified) (view diffs)
generated/java/magetab/sdrf/Assay_derivedArrayDataFile.java (modified) (view diffs)
generated/java/magetab/sdrf/Assay_derivedArrayDataMatrixFiles.java (modified) (view diffs)
generated/java/magetab/sdrf/BioMaterial.java (modified) (view diffs)
generated/java/magetab/sdrf/BioMaterial_Characteristics.java (modified) (view diffs)
generated/java/magetab/sdrf/BioMaterial_materialType.java (modified) (view diffs)
generated/java/magetab/sdrf/Characteristic.java (modified) (view diffs)
generated/java/magetab/sdrf/Extract.java (modified) (view diffs)
generated/java/magetab/sdrf/FactorValue.java (modified) (view diffs)
generated/java/magetab/sdrf/LabeledExtract.java (modified) (view diffs)
generated/java/magetab/sdrf/LabeledExtract_Label.java (modified) (view diffs)
generated/java/magetab/sdrf/Material.java (modified) (view diffs)
generated/java/magetab/sdrf/Material_SourceMaterials.java (modified) (view diffs)
generated/java/magetab/sdrf/Material_protocolApplications.java (modified) (view diffs)
generated/java/magetab/sdrf/Measurement.java (modified) (view diffs)
generated/java/magetab/sdrf/Normalization.java (modified) (view diffs)
generated/java/magetab/sdrf/Normalization_derivedArrayDataFile.java (modified) (view diffs)
generated/java/magetab/sdrf/ParameterValue.java (modified) (view diffs)
generated/java/magetab/sdrf/ProtocolApplication.java (modified) (view diffs)
generated/java/magetab/sdrf/ProtocolApplication_Performer.java (modified) (view diffs)
generated/java/magetab/sdrf/R/Assay.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Assay_arrayDataFiles.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Assay_arrayDataMatrixFiles.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Assay_derivedArrayDataFile.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Assay_derivedArrayDataMatrixFiles.R (modified) (view diffs)
generated/java/magetab/sdrf/R/BioMaterial.R (modified) (view diffs)
generated/java/magetab/sdrf/R/BioMaterial_Characteristics.R (modified) (view diffs)
generated/java/magetab/sdrf/R/BioMaterial_materialType.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Characteristic.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Extract.R (modified) (view diffs)
generated/java/magetab/sdrf/R/FactorValue.R (modified) (view diffs)
generated/java/magetab/sdrf/R/LabeledExtract.R (modified) (view diffs)
generated/java/magetab/sdrf/R/LabeledExtract_Label.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Material.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Material_SourceMaterials.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Material_protocolApplications.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Measurement.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Normalization.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Normalization_derivedArrayDataFile.R (modified) (view diffs)
generated/java/magetab/sdrf/R/ParameterValue.R (modified) (view diffs)
generated/java/magetab/sdrf/R/ProtocolApplication.R (modified) (view diffs)
generated/java/magetab/sdrf/R/ProtocolApplication_Performer.R (modified) (view diffs)
generated/java/magetab/sdrf/R/SDRFelement.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Sample.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Scan.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Scan_arrayDataFiles.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Scan_arrayDataMatrixFiles.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Scan_derivedArrayDataFile.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Scan_derivedArrayDataMatrixFiles.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Source.R (modified) (view diffs)
generated/java/magetab/sdrf/R/Source_Providers.R (modified) (view diffs)
generated/java/magetab/sdrf/SDRFelement.java (modified) (view diffs)
generated/java/magetab/sdrf/Sample.java (modified) (view diffs)
generated/java/magetab/sdrf/Scan.java (modified) (view diffs)
generated/java/magetab/sdrf/Scan_arrayDataFiles.java (modified) (view diffs)
generated/java/magetab/sdrf/Scan_arrayDataMatrixFiles.java (modified) (view diffs)
generated/java/magetab/sdrf/Scan_derivedArrayDataFile.java (modified) (view diffs)
generated/java/magetab/sdrf/Scan_derivedArrayDataMatrixFiles.java (modified) (view diffs)
generated/java/magetab/sdrf/Source.java (modified) (view diffs)
generated/java/magetab/sdrf/Source_Providers.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/AssayCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/Assay_arrayDataFilesCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/Assay_arrayDataMatrixFilesCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/Assay_derivedArrayDataFileCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/Assay_derivedArrayDataMatrixFilesCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/BioMaterialCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/BioMaterial_CharacteristicsCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/BioMaterial_materialTypeCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/CharacteristicCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/ExtractCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/FactorValueCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/LabeledExtractCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/LabeledExtract_LabelCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/MaterialCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/Material_SourceMaterialsCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/Material_protocolApplicationsCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/MeasurementCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/NormalizationCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/Normalization_derivedArrayDataFileCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/ParameterValueCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/ProtocolApplicationCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/ProtocolApplication_PerformerCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/SDRFelementCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/SampleCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/ScanCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/Scan_arrayDataFilesCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/Scan_arrayDataMatrixFilesCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/Scan_derivedArrayDataFileCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/Scan_derivedArrayDataMatrixFilesCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/SourceCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/csv/Source_ProvidersCsvReader.java (modified) (view diffs)
generated/java/magetab/sdrf/db/AssayMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/Assay_arrayDataFilesMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/Assay_arrayDataMatrixFilesMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/Assay_derivedArrayDataFileMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/Assay_derivedArrayDataMatrixFilesMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/BioMaterialMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/BioMaterial_CharacteristicsMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/BioMaterial_materialTypeMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/CharacteristicMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/ExtractMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/FactorValueMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/LabeledExtractMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/LabeledExtract_LabelMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/MaterialMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/Material_SourceMaterialsMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/Material_protocolApplicationsMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/MeasurementMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/NormalizationMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/Normalization_derivedArrayDataFileMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/ParameterValueMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/ProtocolApplicationMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/ProtocolApplication_PerformerMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/SDRFelementMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/SampleMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/ScanMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/Scan_arrayDataFilesMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/Scan_arrayDataMatrixFilesMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/Scan_derivedArrayDataFileMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/Scan_derivedArrayDataMatrixFilesMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/SourceMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/db/Source_ProvidersMapper.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/AssayExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/Assay_arrayDataFilesExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/Assay_arrayDataMatrixFilesExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/Assay_derivedArrayDataFileExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/Assay_derivedArrayDataMatrixFilesExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/BioMaterialExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/BioMaterial_CharacteristicsExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/BioMaterial_materialTypeExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/CharacteristicExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/ExtractExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/FactorValueExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/LabeledExtractExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/LabeledExtract_LabelExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/MaterialExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/Material_SourceMaterialsExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/Material_protocolApplicationsExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/MeasurementExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/NormalizationExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/Normalization_derivedArrayDataFileExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/ParameterValueExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/ProtocolApplicationExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/ProtocolApplication_PerformerExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/SDRFelementExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/SampleExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/ScanExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/Scan_arrayDataFilesExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/Scan_arrayDataMatrixFilesExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/Scan_derivedArrayDataFileExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/Scan_derivedArrayDataMatrixFilesExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/SourceExcelReader.java (modified) (view diffs)
generated/java/magetab/sdrf/excel/Source_ProvidersExcelReader.java (modified) (view diffs)
generated/java/test/TestCsv.java (modified) (view diffs)
generated/java/test/TestDataSet.java (modified) (view diffs)
generated/java/test/TestDatabase.java (modified) (view diffs)
generated/python/magetab/adf/ArrayDesign.py (modified) (view diffs)
generated/python/magetab/adf/CompositeElement.py (modified) (view diffs)
generated/python/magetab/adf/CompositeElement_Comments.py (modified) (view diffs)
generated/python/magetab/adf/CompositeElement_DatabaseEntry.py (modified) (view diffs)
generated/python/magetab/adf/CompositeElement_Reporters.py (modified) (view diffs)
generated/python/magetab/adf/DesignElement.py (modified) (view diffs)
generated/python/magetab/adf/Feature.py (modified) (view diffs)
generated/python/magetab/adf/Reporter.py (modified) (view diffs)
generated/python/magetab/adf/ReporterGroup.py (modified) (view diffs)
generated/python/magetab/adf/Reporter_ControlType.py (modified) (view diffs)
generated/python/magetab/adf/Reporter_DatabaseEntry.py (modified) (view diffs)
generated/python/magetab/adf/Reporter_reporterGroup.py (modified) (view diffs)
generated/python/magetab/data/Data.py (modified) (view diffs)
generated/python/magetab/data/DataElement.py (modified) (view diffs)
generated/python/magetab/data/DataFile.py (modified) (view diffs)
generated/python/magetab/data/DataMatrix.py (modified) (view diffs)
generated/python/magetab/data/DimensionElement.py (modified) (view diffs)
generated/python/magetab/data/Image.py (modified) (view diffs)
generated/python/magetab/idf/Contact.py (modified) (view diffs)
generated/python/magetab/idf/Factor.py (modified) (view diffs)
generated/python/magetab/idf/Identifiable.py (modified) (view diffs)
generated/python/magetab/idf/Investigation.py (modified) (view diffs)
generated/python/magetab/idf/Investigation_ExperimentalDesigns.py (modified) (view diffs)
generated/python/magetab/idf/Investigation_Factors.py (modified) (view diffs)
generated/python/magetab/idf/Investigation_NormalizationTypes.py (modified) (view diffs)
generated/python/magetab/idf/Investigation_Persons.py (modified) (view diffs)
generated/python/magetab/idf/Investigation_Protocols.py (modified) (view diffs)
generated/python/magetab/idf/Investigation_Publications.py (modified) (view diffs)
generated/python/magetab/idf/Investigation_QualityControls.py (modified) (view diffs)
generated/python/magetab/idf/Investigation_ReplicateTypes.py (modified) (view diffs)
generated/python/magetab/idf/NameValueType.py (modified) (view diffs)
generated/python/magetab/idf/OntologySource.py (modified) (view diffs)
generated/python/magetab/idf/OntologyTerm.py (modified) (view diffs)
generated/python/magetab/idf/Person.py (modified) (view diffs)
generated/python/magetab/idf/Person_Roles.py (modified) (view diffs)
generated/python/magetab/idf/Protocol.py (modified) (view diffs)
generated/python/magetab/idf/ProtocolParameter.py (modified) (view diffs)
generated/python/magetab/idf/Publication.py (modified) (view diffs)
generated/python/magetab/sdrf/Assay.py (modified) (view diffs)
generated/python/magetab/sdrf/Assay_arrayDataFiles.py (modified) (view diffs)
generated/python/magetab/sdrf/Assay_arrayDataMatrixFiles.py (modified) (view diffs)
generated/python/magetab/sdrf/Assay_derivedArrayDataFile.py (modified) (view diffs)
generated/python/magetab/sdrf/Assay_derivedArrayDataMatrixFiles.py (modified) (view diffs)
generated/python/magetab/sdrf/BioMaterial.py (modified) (view diffs)
generated/python/magetab/sdrf/BioMaterial_Characteristics.py (modified) (view diffs)
generated/python/magetab/sdrf/BioMaterial_materialType.py (modified) (view diffs)
generated/python/magetab/sdrf/Characteristic.py (modified) (view diffs)
generated/python/magetab/sdrf/Extract.py (modified) (view diffs)
generated/python/magetab/sdrf/FactorValue.py (modified) (view diffs)
generated/python/magetab/sdrf/LabeledExtract.py (modified) (view diffs)
generated/python/magetab/sdrf/LabeledExtract_Label.py (modified) (view diffs)
generated/python/magetab/sdrf/Material.py (modified) (view diffs)
generated/python/magetab/sdrf/Material_SourceMaterials.py (modified) (view diffs)
generated/python/magetab/sdrf/Material_protocolApplications.py (modified) (view diffs)
generated/python/magetab/sdrf/Measurement.py (modified) (view diffs)
generated/python/magetab/sdrf/Normalization.py (modified) (view diffs)
generated/python/magetab/sdrf/Normalization_derivedArrayDataFile.py (modified) (view diffs)
generated/python/magetab/sdrf/ParameterValue.py (modified) (view diffs)
generated/python/magetab/sdrf/ProtocolApplication.py (modified) (view diffs)
generated/python/magetab/sdrf/ProtocolApplication_Performer.py (modified) (view diffs)
generated/python/magetab/sdrf/SDRFelement.py (modified) (view diffs)
generated/python/magetab/sdrf/Sample.py (modified) (view diffs)
generated/python/magetab/sdrf/Scan.py (modified) (view diffs)
generated/python/magetab/sdrf/Scan_arrayDataFiles.py (modified) (view diffs)
generated/python/magetab/sdrf/Scan_arrayDataMatrixFiles.py (modified) (view diffs)
generated/python/magetab/sdrf/Scan_derivedArrayDataFile.py (modified) (view diffs)
generated/python/magetab/sdrf/Scan_derivedArrayDataMatrixFiles.py (modified) (view diffs)
generated/python/magetab/sdrf/Source.py (modified) (view diffs)
generated/python/magetab/sdrf/Source_Providers.py (modified) (view diffs)
generated/sql/alter_tables.sql (modified) (view diffs)
generated/sql/create_tables.sql (modified) (view diffs)
handwritten/java/ImportMageTab.java (modified) (view diffs)
handwritten/java/TestParsedVersusDatabase.java (added)
handwritten/java/importers/IDFparser.java (modified) (view diffs)
handwritten/java/importers/SDRFparser.java (modified) (view diffs)
handwritten/java/test (added)
handwritten/java/test/TestParsedVersusDatabase.java (added)
magetab_adf.xml (modified) (view diffs)
magetab_data.xml (modified) (view diffs)
magetab_idf.xml (modified) (view diffs)
magetab_sdrf.xml (modified) (view diffs)

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