News

Visual Analytics for Bio-Workflows at BIOINFORMATICS-2013

"Visualization of bioinformatics workflows for ease of understanding and design activities" paper will be presented at the BIOSTEC-BIOINFORMATICS-2013 conference, on February 11th, 2013, Bercelona, Spain. [http://www.molgenis.org/raw-attachment/blog ...

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• Posted: 2013-01-31 10:57 (Updated: 2013-01-31 10:59)
• Author: george
• Categories: MCF
• Comments (0)

MOLGENIS/compute workshop at BioAssist meeting

MOLGENIS/compute workshop took place at the NBIC Bio Assist meeting, in Utrect, Oct.12, 2012

• Posted: 2012-11-22 13:41 (Updated: 2012-11-22 13:42)
• Author: george
• Categories: MCF
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MOLGENIS/compute at IWSG-Life 2012

MOLGENIS/compute demo was given at the 4th International Workshop on Science Gateways for Life Sciences, May 23-25 2012, Amsterdam, Netherlands

• Posted: 2012-11-22 13:33
• Author: george
• Categories: MCF
• Comments (0)

MOLGENIS/compute at NBIC-2012

MOLGENIS/compute demo was given at the NBIC-2012 conference in Lunteren, Netherlands, Apr.23, 2012

• Posted: 2012-11-22 13:28
• Author: george
• Categories: MCF
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MOLGENIS/compute at BIOINFORMATICS-2012

MOLGENIS/compute was accepted as a full paper and presented at the International Conference on Bioinformatics Models, Methods and Algorithms, Algarve, Portugal, Feb.3 2012. (BIOINFORMATICS 2012 received 109 submissions, of which 14% were accepted as ...

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• Posted: 2012-11-22 13:17 (Updated: 2013-01-31 10:50)
• Author: george
• Categories: MCF
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MOLGENIS/compute at NPC-2011

Poster: "Monitoring and error-handling of bioinformatics workflow execution in a distributed environment" will be presented at the Netherlands Proteomics Conference, NPC-2011, Utrecht, Netherlands, January 13, 2011

• Posted: 2011-01-11 13:49 (Updated: 2012-11-19 14:23)
• Author: george
• Categories: MCF
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MOLGENIS/compute at PDP-2011

MOLGENIS/compute will be presented at the 19th Euromicro International Conference on Parallel, Distributed and Network-Based Computing, PDP 2011, Ayia Napa, Cyprus, February 9-11, 2011. [http://www.molgenis.org/raw-attachment/blog/mcf-cyprus/pdp-201 ...

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• Posted: 2010-10-27 14:02 (Updated: 2013-01-31 10:53)
• Author: george
• Categories: MCF
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Welcome to MOLGENIS Compute

MOLGENIS Compute is a framework for bioinformatics which enables large scale data and computational workflow management in a distributed execution environment.

Documentation:

•  Compute framework tutorial
•  Imputation pipeline
•  Next-generation sequencing pipeline
•  Installation of tools

Recent presentations:

• Molgenis Compute presentation at eBioGrid (December 2012)
• Molgenis Compute presentation at NBIC BioAssist (October 2012)

Publications:

• Introducing Data Provenance and Error Handling for NGS Workflows within the MOLGENIS Computational Framework (2012)
• Towards a MOLGENIS based computational framework (2011)

Download:

•  Compiled MOLGENIS Compute v4 distribution of 2013-03-08
•  Source code repository at GitHub

Where Molgenis/compute is used?

Who is behind Molgenis/compute ?

Molgenis/compute is created by the Genomics Coordination Center team in the University Medical Centre Groningen, the Netherlands.