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Table of Contents
Introduction
MOLGENIS application overview
- Browsing and editing
- CSV file loading
- Connecting to R
- Connecting to SOAP web services
- Connecting to REST web services using CURL
- Molgenis as a datasource for Galaxy
Toolkit Installation
- Preperation on Windows
- Preperation on Ubuntu/Linux
- Installation of Eclipse/Galileo
- Installation of Eclipse/Helios
- Download MOLGENIS
Generating your own applications
- MOLGENIS workspace basics
- Running the generator
- Modeling a new MOLGENIS
- Modeling an existing database
- molgenis.properties file
Adding plug-ins
Building on the MOLGENIS framework
MOLGENIS Data Modeling Language Reference
MOLGENIS User Interface Modeling Language Reference
MOLGENIS framework API
Frequently asked questions
- How to change molgenis url from /molgenis_distro to xyz
- How to change the MolgenisServlet, e.g. to add more services
- How to extend an existing database model
- Case sensitivity and issues between windows, linux and mac
- How to create a hyperlink from plugin to another form
- How to create a hyperlink from plugin to another form
- How to create a hyperlink from plugin to another form
<module>
The <module> element allows designers to group entities in packages which will show up in the generated documentation (and in future MOLGENIS also in the package structure). Example usage:
<molgenis name="example"> <module name="module1"> <description>This is my first module</description> <entity name="entity1"> <field name="f1" type="string" unique="true"/> <field name="f2" type="string"/> <field name="f3" type="string"/> </entity> <entity name="entity2"> <field name="f1" type="string" unique="true"/> <field name="f2" type="string"/> <field name="f3" type="string"/> </entity> </module> </molgenis>
Required attributes
- name="name": globally unique name for this entity (within this blueprint).
No optional attributes
Child elements
- One or more <entity> elements
- Zero or one <description> element