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Table of Contents
Introduction
MOLGENIS application overview
- Browsing and editing
- CSV file loading
- Connecting to R
- Connecting to SOAP web services
- Connecting to REST web services using CURL
- Molgenis as a datasource for Galaxy
Toolkit Installation
- Preperation on Windows
- Preperation on Ubuntu/Linux
- Installation of Eclipse/Galileo
- Installation of Eclipse/Helios
- Download MOLGENIS
Generating your own applications
- MOLGENIS workspace basics
- Running the generator
- Modeling a new MOLGENIS
- Modeling an existing database
- molgenis.properties file
Adding plug-ins
Building on the MOLGENIS framework
MOLGENIS Data Modeling Language Reference
MOLGENIS User Interface Modeling Language Reference
MOLGENIS framework API
Frequently asked questions
- How to change molgenis url from /molgenis_distro to xyz
- How to change the MolgenisServlet, e.g. to add more services
- How to extend an existing database model
- Case sensitivity and issues between windows, linux and mac
- How to create a hyperlink from plugin to another form
- How to create a hyperlink from plugin to another form
- How to create a hyperlink from plugin to another form
Emaling from within your MOLGENIS application
Since 3.4.x
Set your email settings in 'molgenis.properties'
See MolgenisProperties.
############################################################### # 3. EMAIL settings if you want to email from within MOLGENIS plugins # If you use smpts you may need to certify that you trust the server # see http://blogs.sun.com/andreas/entry/no_more_unable_to_find ############################################################### mail_smtp_from = noreply@molgenis.org mail_smtp_protocol = smtps # protocol is either smtp or smtps mail_smtp_hostname = smtp.gmail.com mail_smtp_port = 587 mail_smtp_user = molgenis mail_smtp_password = molgenispass
Add the following code to your plugin
Inside your plugin you can use 'getEmailService()' to get access to the mail system. For example:
String from = "test@myserver.org"; String to = "myfriend@anotherserver.org"; String message = "Dear Mr. X. We welcome you to read our first email."; this.getEmailService().email(from, message, to);