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Table of Contents
Introduction
MOLGENIS application overview
- Browsing and editing
- CSV file loading
- Connecting to R
- Connecting to SOAP web services
- Connecting to REST web services using CURL
- Molgenis as a datasource for Galaxy
Toolkit Installation
- Preperation on Windows
- Preperation on Ubuntu/Linux
- Installation of Eclipse/Galileo
- Installation of Eclipse/Helios
- Download MOLGENIS
Generating your own applications
- MOLGENIS workspace basics
- Running the generator
- Modeling a new MOLGENIS
- Modeling an existing database
- molgenis.properties file
Adding plug-ins
Building on the MOLGENIS framework
MOLGENIS Data Modeling Language Reference
MOLGENIS User Interface Modeling Language Reference
MOLGENIS framework API
Frequently asked questions
- How to change molgenis url from /molgenis_distro to xyz
- How to change the MolgenisServlet, e.g. to add more services
- How to extend an existing database model
- Case sensitivity and issues between windows, linux and mac
- How to create a hyperlink from plugin to another form
- How to create a hyperlink from plugin to another form
- How to create a hyperlink from plugin to another form
Using the SOAP interface in Taverna
On the MOLGENIS user interface there is a link to the SOAP interface for web services. Here we will show how to use web services to access the data from Taverna. If you read this we is assume that you already installed Taverna from the http://taverna.sourceforge.net .
- Start the MOLGENIS server for your Address Book application and browse to the user interface.
- Click the ‘Web Services API’ pagelink on the top menu of your Address Book and view and copy the hyperlink http://..... api/soap?wsdl.
Note: a WSDL file is a standard description format of web services in the SOAP protocol. - Start Taverna and add the WSDL to Taverna using the WSDL scavenger as shown in the screenshot below:
- Assuming you experienced Taverna user explore the usage of the services added. Otherwise we recommend to follow a Taverna tutorial first. Hint: use ‘splitters’ to ease the adding of parameters. Note: update and remove services have been disabled in the standard MOLGENIS distro.
Example services based on the MolgenisAddressBookExample:
Attachments
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taverna-addressbook.gif
(3.5 KB) -
added by mswertz 2 years ago.
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taverna-add-wsdl.gif
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added by mswertz 2 years ago.
